Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ...
Little is known about the potential for acclimatization or adaptation of corals to ocean acidification and even less about the molecular mechanisms underpinning these processes. Here we examine global gene expression patterns in corals and their intracellular algal symbionts from two replicate popul...
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Online Access: | https://dx.doi.org/10.5061/dryad.k57p6 https://datadryad.org/stash/dataset/doi:10.5061/dryad.k57p6 |
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ftdatacite:10.5061/dryad.k57p6 2024-01-28T10:08:17+01:00 Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... Kenkel, Carly D. Moya, Aurelie Strahl, Julia Humphrey, Craig Bay, Line K. 2018 https://dx.doi.org/10.5061/dryad.k57p6 https://datadryad.org/stash/dataset/doi:10.5061/dryad.k57p6 en eng Dryad https://dx.doi.org/10.1111/gcb.13833 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Carbon dioxide Symbiosis Lipid metabolism Symbiodinium spp. Acclimatization Acropora millepora Dataset dataset 2018 ftdatacite https://doi.org/10.5061/dryad.k57p610.1111/gcb.13833 2024-01-04T15:12:18Z Little is known about the potential for acclimatization or adaptation of corals to ocean acidification and even less about the molecular mechanisms underpinning these processes. Here we examine global gene expression patterns in corals and their intracellular algal symbionts from two replicate population pairs in Papua New Guinea that have undergone long-term acclimatization to natural variation in pCO2. In the coral host, only 61 genes were differentially expressed in response to pCO2 environment, but the pattern of change was highly consistent between replicate populations, likely reflecting the core expression homeostasis response to ocean acidification. Functional annotations highlight lipid metabolism and a change in the stress response capacity of corals as key parts of this process. Specifically, constitutive downregulation of molecular chaperones was observed, which may impact response to combined climate-change related stressors. Elevated CO2 has been hypothesized to benefit photosynthetic organisms ... : Photographs of sampled coralsPhotographs were taken at the time of collection. Image file name indicates coral colony number corresponding to raw TagSeq reads. Labels within images contain date/time/GPS information.MilneBayCollections_Small.zipR script for DESeq analyses and tables of read countsAnnotated R script for replicating DESeq analyses as described in the linked publication. Input files are tables of TagSeq read counts for host and symbionts, post-quality trimming and mapping to the Acropora millepora and Symbiodinium clade C reference transcriptomes, respectively.RscriptInputFiles.zip ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Carbon dioxide Symbiosis Lipid metabolism Symbiodinium spp. Acclimatization Acropora millepora |
spellingShingle |
Carbon dioxide Symbiosis Lipid metabolism Symbiodinium spp. Acclimatization Acropora millepora Kenkel, Carly D. Moya, Aurelie Strahl, Julia Humphrey, Craig Bay, Line K. Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
topic_facet |
Carbon dioxide Symbiosis Lipid metabolism Symbiodinium spp. Acclimatization Acropora millepora |
description |
Little is known about the potential for acclimatization or adaptation of corals to ocean acidification and even less about the molecular mechanisms underpinning these processes. Here we examine global gene expression patterns in corals and their intracellular algal symbionts from two replicate population pairs in Papua New Guinea that have undergone long-term acclimatization to natural variation in pCO2. In the coral host, only 61 genes were differentially expressed in response to pCO2 environment, but the pattern of change was highly consistent between replicate populations, likely reflecting the core expression homeostasis response to ocean acidification. Functional annotations highlight lipid metabolism and a change in the stress response capacity of corals as key parts of this process. Specifically, constitutive downregulation of molecular chaperones was observed, which may impact response to combined climate-change related stressors. Elevated CO2 has been hypothesized to benefit photosynthetic organisms ... : Photographs of sampled coralsPhotographs were taken at the time of collection. Image file name indicates coral colony number corresponding to raw TagSeq reads. Labels within images contain date/time/GPS information.MilneBayCollections_Small.zipR script for DESeq analyses and tables of read countsAnnotated R script for replicating DESeq analyses as described in the linked publication. Input files are tables of TagSeq read counts for host and symbionts, post-quality trimming and mapping to the Acropora millepora and Symbiodinium clade C reference transcriptomes, respectively.RscriptInputFiles.zip ... |
format |
Dataset |
author |
Kenkel, Carly D. Moya, Aurelie Strahl, Julia Humphrey, Craig Bay, Line K. |
author_facet |
Kenkel, Carly D. Moya, Aurelie Strahl, Julia Humphrey, Craig Bay, Line K. |
author_sort |
Kenkel, Carly D. |
title |
Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
title_short |
Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
title_full |
Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
title_fullStr |
Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
title_full_unstemmed |
Data from: Functional genomic analysis of corals from natural CO2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
title_sort |
data from: functional genomic analysis of corals from natural co2-seeps reveals core molecular responses involved in acclimatization to ocean acidification ... |
publisher |
Dryad |
publishDate |
2018 |
url |
https://dx.doi.org/10.5061/dryad.k57p6 https://datadryad.org/stash/dataset/doi:10.5061/dryad.k57p6 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://dx.doi.org/10.1111/gcb.13833 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.k57p610.1111/gcb.13833 |
_version_ |
1789336857340805120 |