Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ...
This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. ... : SRX814890Sequence files of Colobanthus quitensis transcriptome grown in...
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ftdatacite:10.5061/dryad.jp1mk 2024-02-04T09:54:39+01:00 Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... Bertini, Laura Proietti, Silvia Caruso, Carla 2015 https://dx.doi.org/10.5061/dryad.jp1mk https://datadryad.org/stash/dataset/doi:10.5061/dryad.jp1mk en eng Dryad https://www.ncbi.nlm.nih.gov/nuccore/SRX814890 https://dx.doi.org/10.1111/1755-0998.12419 https://www.ncbi.nlm.nih.gov/nuccore/SRX814890 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Genetic resource Colobanthus quitensis Assembly Dataset dataset 2015 ftdatacite https://doi.org/10.5061/dryad.jp1mk10.1111/1755-0998.12419 2024-01-05T04:51:50Z This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. ... : SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.Blast Hits of Colobanthus quitensis transcriptomeAll contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value<10-5) (Altschul et al. 1990).blastx_C_quietensis_vs_Viridiplantae_no_Ptrichocarpa_no_Vvinifera.csv ... Dataset Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic The Antarctic |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Genetic resource Colobanthus quitensis Assembly |
spellingShingle |
Genetic resource Colobanthus quitensis Assembly Bertini, Laura Proietti, Silvia Caruso, Carla Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
topic_facet |
Genetic resource Colobanthus quitensis Assembly |
description |
This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. ... : SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.Blast Hits of Colobanthus quitensis transcriptomeAll contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value<10-5) (Altschul et al. 1990).blastx_C_quietensis_vs_Viridiplantae_no_Ptrichocarpa_no_Vvinifera.csv ... |
format |
Dataset |
author |
Bertini, Laura Proietti, Silvia Caruso, Carla |
author_facet |
Bertini, Laura Proietti, Silvia Caruso, Carla |
author_sort |
Bertini, Laura |
title |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
title_short |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
title_full |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
title_fullStr |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
title_full_unstemmed |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 ... |
title_sort |
data from: "transcriptome sequencing of the antarctic colobanthus quitensis (kunth) bartl (caryophillaceae)" in genomic resources notes accepted 1 february 2015 – 31 march 2015 ... |
publisher |
Dryad |
publishDate |
2015 |
url |
https://dx.doi.org/10.5061/dryad.jp1mk https://datadryad.org/stash/dataset/doi:10.5061/dryad.jp1mk |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
https://www.ncbi.nlm.nih.gov/nuccore/SRX814890 https://dx.doi.org/10.1111/1755-0998.12419 https://www.ncbi.nlm.nih.gov/nuccore/SRX814890 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.jp1mk10.1111/1755-0998.12419 |
_version_ |
1789974615438655488 |