Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ...
Atlantic salmon (Salmo salar) is one of the most extensively studied fish species in the world due to its significance in aquaculture, fisheries and ongoing conservation efforts to protect declining populations. Yet, limited genomic resources have hampered our understanding of genetic architecture i...
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ftdatacite:10.5061/dryad.gm367 2024-02-04T09:58:54+01:00 Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... Bourret, Vincent Kent, Matthew P. Primmer, Craig R. Vasemägi, Anti Karlsson, Sten Hindar, Kjetil McGinnity, Philip Verspoor, Eric Bernatchez, Louis Lien, Sigbjørn 2018 https://dx.doi.org/10.5061/dryad.gm367 https://datadryad.org/stash/dataset/doi:10.5061/dryad.gm367 en eng Dryad https://dx.doi.org/10.1111/mec.12003 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 single nucleotide polymorphism Salmo salar Aquaculture Dataset dataset 2018 ftdatacite https://doi.org/10.5061/dryad.gm36710.1111/mec.12003 2024-01-05T04:51:50Z Atlantic salmon (Salmo salar) is one of the most extensively studied fish species in the world due to its significance in aquaculture, fisheries and ongoing conservation efforts to protect declining populations. Yet, limited genomic resources have hampered our understanding of genetic architecture in the species and the genetic basis of adaptation to the wide range of natural and artificial environments it occupies. In this paper, we describe the development of a medium density Atlantic salmon SNP-array based on Expressed Sequence Tags (ESTs) and genomic sequencing. The array was used in the most extensive assessment of population genetic structure performed to date in this species. A total of 6176 informative SNPs were successfully genotyped in 38 anadromous and freshwater wild populations distributed across the species natural range. Principal component analysis clearly differentiated European and North American populations, and within Europe, three major regional genetic groups were identified for the ... : Genotypes_Dryad6176 SNP genotypes for 1295 samples used in submitted analysis (all but Foyle River population). For access to genotypes from Foyle River samples, please contact Dr. Dennis Ensing at Agri-Food & Biosciences Institute, Fisheries & Aquatic Ecosystems Branch . See paper for information on genotyping and SNP discovery.Baltic_Cfit_InputInput file for Cfit software. Includes populations geographic distances along the Baltic-Atlantic continuum (see paper) and allele counts for each populations.Barents_Cfit_InputInput file for Cfit software. Includes geographic distances for populations along the Barents-Atlantic continuum (see paper) as well as allele counts for each populations. ... Dataset Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
single nucleotide polymorphism Salmo salar Aquaculture |
spellingShingle |
single nucleotide polymorphism Salmo salar Aquaculture Bourret, Vincent Kent, Matthew P. Primmer, Craig R. Vasemägi, Anti Karlsson, Sten Hindar, Kjetil McGinnity, Philip Verspoor, Eric Bernatchez, Louis Lien, Sigbjørn Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
topic_facet |
single nucleotide polymorphism Salmo salar Aquaculture |
description |
Atlantic salmon (Salmo salar) is one of the most extensively studied fish species in the world due to its significance in aquaculture, fisheries and ongoing conservation efforts to protect declining populations. Yet, limited genomic resources have hampered our understanding of genetic architecture in the species and the genetic basis of adaptation to the wide range of natural and artificial environments it occupies. In this paper, we describe the development of a medium density Atlantic salmon SNP-array based on Expressed Sequence Tags (ESTs) and genomic sequencing. The array was used in the most extensive assessment of population genetic structure performed to date in this species. A total of 6176 informative SNPs were successfully genotyped in 38 anadromous and freshwater wild populations distributed across the species natural range. Principal component analysis clearly differentiated European and North American populations, and within Europe, three major regional genetic groups were identified for the ... : Genotypes_Dryad6176 SNP genotypes for 1295 samples used in submitted analysis (all but Foyle River population). For access to genotypes from Foyle River samples, please contact Dr. Dennis Ensing at Agri-Food & Biosciences Institute, Fisheries & Aquatic Ecosystems Branch . See paper for information on genotyping and SNP discovery.Baltic_Cfit_InputInput file for Cfit software. Includes populations geographic distances along the Baltic-Atlantic continuum (see paper) and allele counts for each populations.Barents_Cfit_InputInput file for Cfit software. Includes geographic distances for populations along the Barents-Atlantic continuum (see paper) as well as allele counts for each populations. ... |
format |
Dataset |
author |
Bourret, Vincent Kent, Matthew P. Primmer, Craig R. Vasemägi, Anti Karlsson, Sten Hindar, Kjetil McGinnity, Philip Verspoor, Eric Bernatchez, Louis Lien, Sigbjørn |
author_facet |
Bourret, Vincent Kent, Matthew P. Primmer, Craig R. Vasemägi, Anti Karlsson, Sten Hindar, Kjetil McGinnity, Philip Verspoor, Eric Bernatchez, Louis Lien, Sigbjørn |
author_sort |
Bourret, Vincent |
title |
Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
title_short |
Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
title_full |
Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
title_fullStr |
Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
title_full_unstemmed |
Data from: SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar) ... |
title_sort |
data from: snp-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of atlantic salmon (salmo salar) ... |
publisher |
Dryad |
publishDate |
2018 |
url |
https://dx.doi.org/10.5061/dryad.gm367 https://datadryad.org/stash/dataset/doi:10.5061/dryad.gm367 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.1111/mec.12003 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.gm36710.1111/mec.12003 |
_version_ |
1789963488376913920 |