Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ...
The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf e...
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ftdatacite:10.5061/dryad.g68k008 2024-02-04T09:59:28+01:00 Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... Fitak, Robert R. Rinkevich, Sarah E. Culver, Melanie 2018 https://dx.doi.org/10.5061/dryad.g68k008 https://datadryad.org/stash/dataset/doi:10.5061/dryad.g68k008 en eng Dryad https://dx.doi.org/10.1093/jhered/esy009 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Canis lupus baileyi conservation genomics New Mexico gray wolves Conservation genetics and biodiversity Single nucleotide polymorphisms Arizona Dataset dataset 2018 ftdatacite https://doi.org/10.5061/dryad.g68k00810.1093/jhered/esy009 2024-01-05T01:14:15Z The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf existed only in three separate captive lineages (McBride, Ghost Ranch, and Aragón) descended from three, two, and two founders, respectively. These lineages were merged in 1995 to increase the available genetic variation, and Mexican wolves were reintroduced into Arizona and New Mexico in 1998. Despite the ongoing management of the Mexican wolf population, it has been suggested that a proportion of the Mexican wolf ancestry may be recently derived from hybridization with domestic dogs. In this study, we genotyped 87 Mexican wolves, including individuals from all three captive lineages and cross-lineage wolves, for more than 172,000 single nucleotide polymorphisms (SNPs). We identified levels of genetic variation ... : READMEPlease read for more information and md5 checksums for the contents of this data repository.MW raw dataRaw fluorescence data from the BeadChip analysis. This is RAW, UNPROCESSED data.MW_raw_data.tar.gzMexican Wolf unprocessed genotypesRaw, Mexican wolf genotypes prior to any filtering in the standard PLINK format.MW.pedMexican wolf raw SNP locationsRaw, Mexican wolf SNP locations prior to any filtering in the standard PLINK format.MW.mapMexican Wolf Sample SpreadsheetA simple excel spreadsheet to convert sample IDs between BeadChip IDs, studbook numbers, and museum numbersMW-Samples.xlsxMexican wolf cleaned genotypes PEDThis file contain the filtered set of genotypes and sample information for the 84 samples (83 Mex Wolves and 1 domestic dog). See Table 1 in the manuscript. The format is in the standard PLINK ped format.MW.clean.pedMexican wolf cleaned genotypes MAPThis file contains the SNP position data in the Plink 'map' format for the 62219 SNPs after filtering. See Table 1 in the ... Dataset Canis lupus gray wolf DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Canis lupus baileyi conservation genomics New Mexico gray wolves Conservation genetics and biodiversity Single nucleotide polymorphisms Arizona |
spellingShingle |
Canis lupus baileyi conservation genomics New Mexico gray wolves Conservation genetics and biodiversity Single nucleotide polymorphisms Arizona Fitak, Robert R. Rinkevich, Sarah E. Culver, Melanie Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
topic_facet |
Canis lupus baileyi conservation genomics New Mexico gray wolves Conservation genetics and biodiversity Single nucleotide polymorphisms Arizona |
description |
The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf existed only in three separate captive lineages (McBride, Ghost Ranch, and Aragón) descended from three, two, and two founders, respectively. These lineages were merged in 1995 to increase the available genetic variation, and Mexican wolves were reintroduced into Arizona and New Mexico in 1998. Despite the ongoing management of the Mexican wolf population, it has been suggested that a proportion of the Mexican wolf ancestry may be recently derived from hybridization with domestic dogs. In this study, we genotyped 87 Mexican wolves, including individuals from all three captive lineages and cross-lineage wolves, for more than 172,000 single nucleotide polymorphisms (SNPs). We identified levels of genetic variation ... : READMEPlease read for more information and md5 checksums for the contents of this data repository.MW raw dataRaw fluorescence data from the BeadChip analysis. This is RAW, UNPROCESSED data.MW_raw_data.tar.gzMexican Wolf unprocessed genotypesRaw, Mexican wolf genotypes prior to any filtering in the standard PLINK format.MW.pedMexican wolf raw SNP locationsRaw, Mexican wolf SNP locations prior to any filtering in the standard PLINK format.MW.mapMexican Wolf Sample SpreadsheetA simple excel spreadsheet to convert sample IDs between BeadChip IDs, studbook numbers, and museum numbersMW-Samples.xlsxMexican wolf cleaned genotypes PEDThis file contain the filtered set of genotypes and sample information for the 84 samples (83 Mex Wolves and 1 domestic dog). See Table 1 in the manuscript. The format is in the standard PLINK ped format.MW.clean.pedMexican wolf cleaned genotypes MAPThis file contains the SNP position data in the Plink 'map' format for the 62219 SNPs after filtering. See Table 1 in the ... |
format |
Dataset |
author |
Fitak, Robert R. Rinkevich, Sarah E. Culver, Melanie |
author_facet |
Fitak, Robert R. Rinkevich, Sarah E. Culver, Melanie |
author_sort |
Fitak, Robert R. |
title |
Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
title_short |
Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
title_full |
Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
title_fullStr |
Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
title_full_unstemmed |
Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi) ... |
title_sort |
data from: genome-wide analysis of snps is consistent with no domestic dog ancestry in the endangered mexican wolf (canis lupus baileyi) ... |
publisher |
Dryad |
publishDate |
2018 |
url |
https://dx.doi.org/10.5061/dryad.g68k008 https://datadryad.org/stash/dataset/doi:10.5061/dryad.g68k008 |
genre |
Canis lupus gray wolf |
genre_facet |
Canis lupus gray wolf |
op_relation |
https://dx.doi.org/10.1093/jhered/esy009 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.g68k00810.1093/jhered/esy009 |
_version_ |
1789964287283822592 |