LampLD 3-way local admixture results and phased genotypes

• Main Authors: Fitak, Robert, Rinkevich, Sarah, Culver, Melanie
• Format: Dataset
• Language: unknown
• Published: Dryad Digital Repository 2018
• Subjects: single nucleotide polymorphisms; gray wolves; conservation genomics; Arizona; New Mexico; hybridization Subject area Conservation genetics and biodiversity; Canis lupus baileyi; Canis lupus
• Online Access: https://dx.doi.org/10.5061/dryad.g68k008/15; http://datadryad.org/resource/doi:10.5061/dryad.g68k008/15

This file, once unpacked, contains the results of the local ancestry analysis using LAMP-LD v1.3. In addition to the numerous output files, there is a folder for each of the 38 chromosomes. Each chromosome's folder contains the LAMP-LD results. Most importantly, for each chromosome the phased genotypes generated using Beagle are found in the files chr#_phased.txt. I recommend following the code described at the GitHub page https://github.com/rfitak/Mexican_Wolf_SNPs to know exactly what each of the files represents.