Data from: Geographic and temporal dynamics of a global radiation and diversification in the killer whale ...

• Main Authors: Morin, Phillip A., Parsons, Kim M., Archer, Frederick I., Ávila-Arcos, María C., Barrett-Lennard, Lance G., Dalla Rosa, Luciano, Duchêne, Sebastián, Durban, John W., Ellis, Graeme M., Ferguson, Steven H., Ford, John K., Ford, Michael J., Gabrilao, Cristina, Gilbert, M. Thomas P., Kaschner, Kristin, Matkin, Craig O., Petersen, Stephen D., Robertson, Kelly M., Visser, Ingrid N., Wade, Paul R., Ho, Simon Y. W., Foote, Andrew D.
• Format: Dataset
• Language: English
• Published: Dryad 2015
• Subjects: SNPs; Orcinus orca; Killer Whale; Orca; Killer whale
• Online Access: https://dx.doi.org/10.5061/dryad.fm4mk; https://datadryad.org/stash/dataset/doi:10.5061/dryad.fm4mk

Global climate change during the Late Pleistocene periodically encroached and then released habitat during the glacial cycles, causing range expansions and contractions in some species. These dynamics have played a major role in geographic radiations, diversification and speciation. We investigate these dynamics in the most widely distributed of marine mammals, the killer whale (Orcinus orca), using a global data set of over 450 samples. This marine top predator inhabits coastal and pelagic ecosystems ranging from the ice edge to the tropics, often exhibiting ecological, behavioural and morphological variation suggestive of local adaptation accompanied by reproductive isolation. Results suggest a rapid global radiation occurred over the last 350 000 years. Based on habitat models, we estimated there was only a 15% global contraction of core suitable habitat during the last glacial maximum, and the resources appeared to sustain a constant global effective female population size throughout the Late ... : Dataset_S1_Killer_Whale_SNP_genotypesO. orca SNP genotypes for 91 SNPs, 128 samples. Alleles have been re-coded for programs that only accept numerical alleles. G = 1, A =2 , C = 3, T = 4. Missing data are represented by 0.Dataset_S1_AS7genotypes.xlsxDataset_S2_Beast_in_158mtGen_partitionedInput xml file for phylogenetic analysis in the program BEAST 1.8, containing partitioned mitochondrial sequence data and phylogenetic analysis parameters as described in the methods.Dataset_S3_Beast_out_158mtGen_partitioned_consantTree file output from BEAST v1.8 phylogenetic analysis of the data from Dataset S2.Dataset_S4_SNAPPinput_AS7_42SNP_113indivInput xml file for analysis of SNP data in the program SNAPP, within the BEAST v2.0 package.Dataset_S5_SNAPPoutput_AS7_42SNP_113indivOutput phylogenetic tree file from the program SNAPP, based on data and parameters in the input file Dataset_S4.Dataset_S6_DelphinidaeXML file of aligned Delphinidae mitochondrial genome sequences with partitions and parameters used for ...