Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ...
The resiliency of populations and species to environmental change is dependent on the maintenance of genetic diversity, and as such quantifying diversity is central to combatting ongoing wide spread reductions in biodiversity. With the advent of next-generation sequencing, several methods now exist...
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2020
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Online Access: | https://dx.doi.org/10.5061/dryad.b5mkkwh8q https://datadryad.org/stash/dataset/doi:10.5061/dryad.b5mkkwh8q |
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ftdatacite:10.5061/dryad.b5mkkwh8q 2024-10-13T14:04:01+00:00 Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... Layton, Kara K.S. Dempson, J. Brian Snelgrove, Paul V.R. Duffy, Steven J. Messmer, Amber M. Paterson, Ian Jeffery, Nicholas W. Kess, Tony Horne, John B. Salisbury, Sarah J. Ruzzante, Daniel E. Bentzen, Paul Côté, David Nugent, Cameron M. Ferguson, Moira M. Leong, Jong S. Koop, Ben F. Bradbury, Ian R. 2020 https://dx.doi.org/10.5061/dryad.b5mkkwh8q https://datadryad.org/stash/dataset/doi:10.5061/dryad.b5mkkwh8q en eng Dryad https://dx.doi.org/10.1111/eva.12922 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 genome-wide polymorphism sequenced microsatellites Genetic assignment mixed stock analysis Dataset dataset 2020 ftdatacite https://doi.org/10.5061/dryad.b5mkkwh8q10.1111/eva.12922 2024-10-01T11:13:53Z The resiliency of populations and species to environmental change is dependent on the maintenance of genetic diversity, and as such quantifying diversity is central to combatting ongoing wide spread reductions in biodiversity. With the advent of next-generation sequencing, several methods now exist for resolving fine-scale population structure, but the comparative performance of these methods for genetic assignment has rarely been tested. Here we evaluate the performance of sequenced microsatellites and a single nucleotide polymorphism (SNP) array to resolve fine-scale population structure in a critically important salmonid in northeastern Canada, Arctic charr (Salvelinus alpinus). We also assess the utility of sequenced microsatellites for fisheries applications by quantifying the spatial scales of movement and exploitation through genetic assignment of fishery samples to rivers of origin and comparing these results with a 29-year tagging dataset. Self-assignment and simulation-based analyses of 111 ... : Files consist of Rubias and genepop input files for microsatellite and SNP data ... Dataset Arctic charr Arctic Salvelinus alpinus DataCite Arctic Canada |
institution |
Open Polar |
collection |
DataCite |
op_collection_id |
ftdatacite |
language |
English |
topic |
genome-wide polymorphism sequenced microsatellites Genetic assignment mixed stock analysis |
spellingShingle |
genome-wide polymorphism sequenced microsatellites Genetic assignment mixed stock analysis Layton, Kara K.S. Dempson, J. Brian Snelgrove, Paul V.R. Duffy, Steven J. Messmer, Amber M. Paterson, Ian Jeffery, Nicholas W. Kess, Tony Horne, John B. Salisbury, Sarah J. Ruzzante, Daniel E. Bentzen, Paul Côté, David Nugent, Cameron M. Ferguson, Moira M. Leong, Jong S. Koop, Ben F. Bradbury, Ian R. Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
topic_facet |
genome-wide polymorphism sequenced microsatellites Genetic assignment mixed stock analysis |
description |
The resiliency of populations and species to environmental change is dependent on the maintenance of genetic diversity, and as such quantifying diversity is central to combatting ongoing wide spread reductions in biodiversity. With the advent of next-generation sequencing, several methods now exist for resolving fine-scale population structure, but the comparative performance of these methods for genetic assignment has rarely been tested. Here we evaluate the performance of sequenced microsatellites and a single nucleotide polymorphism (SNP) array to resolve fine-scale population structure in a critically important salmonid in northeastern Canada, Arctic charr (Salvelinus alpinus). We also assess the utility of sequenced microsatellites for fisheries applications by quantifying the spatial scales of movement and exploitation through genetic assignment of fishery samples to rivers of origin and comparing these results with a 29-year tagging dataset. Self-assignment and simulation-based analyses of 111 ... : Files consist of Rubias and genepop input files for microsatellite and SNP data ... |
format |
Dataset |
author |
Layton, Kara K.S. Dempson, J. Brian Snelgrove, Paul V.R. Duffy, Steven J. Messmer, Amber M. Paterson, Ian Jeffery, Nicholas W. Kess, Tony Horne, John B. Salisbury, Sarah J. Ruzzante, Daniel E. Bentzen, Paul Côté, David Nugent, Cameron M. Ferguson, Moira M. Leong, Jong S. Koop, Ben F. Bradbury, Ian R. |
author_facet |
Layton, Kara K.S. Dempson, J. Brian Snelgrove, Paul V.R. Duffy, Steven J. Messmer, Amber M. Paterson, Ian Jeffery, Nicholas W. Kess, Tony Horne, John B. Salisbury, Sarah J. Ruzzante, Daniel E. Bentzen, Paul Côté, David Nugent, Cameron M. Ferguson, Moira M. Leong, Jong S. Koop, Ben F. Bradbury, Ian R. |
author_sort |
Layton, Kara K.S. |
title |
Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
title_short |
Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
title_full |
Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
title_fullStr |
Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
title_full_unstemmed |
Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
title_sort |
resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish ... |
publisher |
Dryad |
publishDate |
2020 |
url |
https://dx.doi.org/10.5061/dryad.b5mkkwh8q https://datadryad.org/stash/dataset/doi:10.5061/dryad.b5mkkwh8q |
geographic |
Arctic Canada |
geographic_facet |
Arctic Canada |
genre |
Arctic charr Arctic Salvelinus alpinus |
genre_facet |
Arctic charr Arctic Salvelinus alpinus |
op_relation |
https://dx.doi.org/10.1111/eva.12922 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.b5mkkwh8q10.1111/eva.12922 |
_version_ |
1812809196932956160 |