BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format
SNP array data for 316 individuals of Atlantic cod (Gadus morhua), genotyped at 8,165 loci in standard PLINK file format. The PLINK file format consists of two files, a map file and a ped file. In the map file, the first column defines the linkage group, the second column contains the loci names (db...
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Online Access: | https://dx.doi.org/10.5061/dryad.b20ps/1 http://datadryad.org/resource/doi:10.5061/dryad.b20ps/1 |
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ftdatacite:10.5061/dryad.b20ps/1 2023-05-15T14:30:29+02:00 BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format Berg, Paul R. Star, Bastiaan Pampoulie, Christophe Bradbury, Ian R. Bentzen, Paul Hutchings, Jeffrey A. Jentoft, Sissel Jakobsen, Kjetill S. 2017 https://dx.doi.org/10.5061/dryad.b20ps/1 http://datadryad.org/resource/doi:10.5061/dryad.b20ps/1 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.b20ps http://creativecommons.org/publicdomain/zero/1.0 CC0 Chromosomal rearrangement Ecological divergence Genomic adaptation Inversion polymorphism Population genomics SNPs Trans-Atlantic distribution of Atlantic cod Gadus morhua dataset Dataset DataFile 2017 ftdatacite https://doi.org/10.5061/dryad.b20ps/1 https://doi.org/10.5061/dryad.b20ps 2021-11-05T12:55:41Z SNP array data for 316 individuals of Atlantic cod (Gadus morhua), genotyped at 8,165 loci in standard PLINK file format. The PLINK file format consists of two files, a map file and a ped file. In the map file, the first column defines the linkage group, the second column contains the loci names (dbSNP accession numbers), the third line describes the position within the linkage groups (here all are set to 0) and the fourth column defines the order of the SNPs within each linkage group. In the ped file, column one is used to separate the populations (pop-1 to pop-9), column 2 defines the individuals within each population (denoted as the population abbreviation followed by the individual number) where the populations are abbreviated as follows: Can-N_PB = Placentia Bay, Can-N_SG = Southern Gulf of St. Lawrence, Can-S_SB = Sambro, Can-S_GM = Gulf of Maine, Can-S_BB = Browns Bank, Ice_F = Iceland Frontal, Ice_C = Iceland Coastal, NEAC = Northeast Arctic cod, NCC = Norwegian coastal cod. The genotypes are given as numbers from column 7 and onwards, where 1=A, 2=C, 3=G, 4=T. (For a thorough description of the PLINK format, please see https://www.cog-genomics.org/plink). All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP. Dataset Arctic cod Arctic atlantic cod Gadus morhua Iceland Northeast Arctic cod DataCite Metadata Store (German National Library of Science and Technology) Arctic Browns ENVELOPE(-44.583,-44.583,-60.700,-60.700) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Chromosomal rearrangement Ecological divergence Genomic adaptation Inversion polymorphism Population genomics SNPs Trans-Atlantic distribution of Atlantic cod Gadus morhua |
spellingShingle |
Chromosomal rearrangement Ecological divergence Genomic adaptation Inversion polymorphism Population genomics SNPs Trans-Atlantic distribution of Atlantic cod Gadus morhua Berg, Paul R. Star, Bastiaan Pampoulie, Christophe Bradbury, Ian R. Bentzen, Paul Hutchings, Jeffrey A. Jentoft, Sissel Jakobsen, Kjetill S. BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
topic_facet |
Chromosomal rearrangement Ecological divergence Genomic adaptation Inversion polymorphism Population genomics SNPs Trans-Atlantic distribution of Atlantic cod Gadus morhua |
description |
SNP array data for 316 individuals of Atlantic cod (Gadus morhua), genotyped at 8,165 loci in standard PLINK file format. The PLINK file format consists of two files, a map file and a ped file. In the map file, the first column defines the linkage group, the second column contains the loci names (dbSNP accession numbers), the third line describes the position within the linkage groups (here all are set to 0) and the fourth column defines the order of the SNPs within each linkage group. In the ped file, column one is used to separate the populations (pop-1 to pop-9), column 2 defines the individuals within each population (denoted as the population abbreviation followed by the individual number) where the populations are abbreviated as follows: Can-N_PB = Placentia Bay, Can-N_SG = Southern Gulf of St. Lawrence, Can-S_SB = Sambro, Can-S_GM = Gulf of Maine, Can-S_BB = Browns Bank, Ice_F = Iceland Frontal, Ice_C = Iceland Coastal, NEAC = Northeast Arctic cod, NCC = Norwegian coastal cod. The genotypes are given as numbers from column 7 and onwards, where 1=A, 2=C, 3=G, 4=T. (For a thorough description of the PLINK format, please see https://www.cog-genomics.org/plink). All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP. |
format |
Dataset |
author |
Berg, Paul R. Star, Bastiaan Pampoulie, Christophe Bradbury, Ian R. Bentzen, Paul Hutchings, Jeffrey A. Jentoft, Sissel Jakobsen, Kjetill S. |
author_facet |
Berg, Paul R. Star, Bastiaan Pampoulie, Christophe Bradbury, Ian R. Bentzen, Paul Hutchings, Jeffrey A. Jentoft, Sissel Jakobsen, Kjetill S. |
author_sort |
Berg, Paul R. |
title |
BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
title_short |
BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
title_full |
BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
title_fullStr |
BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
title_full_unstemmed |
BergEtAl2017_AtlanticCod_TransatlanticDataset_PLINK-format |
title_sort |
bergetal2017_atlanticcod_transatlanticdataset_plink-format |
publisher |
Dryad Digital Repository |
publishDate |
2017 |
url |
https://dx.doi.org/10.5061/dryad.b20ps/1 http://datadryad.org/resource/doi:10.5061/dryad.b20ps/1 |
long_lat |
ENVELOPE(-44.583,-44.583,-60.700,-60.700) |
geographic |
Arctic Browns |
geographic_facet |
Arctic Browns |
genre |
Arctic cod Arctic atlantic cod Gadus morhua Iceland Northeast Arctic cod |
genre_facet |
Arctic cod Arctic atlantic cod Gadus morhua Iceland Northeast Arctic cod |
op_relation |
https://dx.doi.org/10.5061/dryad.b20ps |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.5061/dryad.b20ps/1 https://doi.org/10.5061/dryad.b20ps |
_version_ |
1766304328006500352 |