Custom Perl script for extracting SNPs

Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.

Bibliographic Details
Main Authors: Malenfant, René M., Coltman, David W., Richardson, Evan S., Lunn, Nicholas J., Davis, Corey S.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2013
Subjects:
Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
Ursus maritimus
Ursidae
Caniformia
Carnivora
Eutheria
Mammalia
Animalia
Wapusk national park
Online Access:https://dx.doi.org/10.5061/dryad.606j6/1
http://datadryad.org/resource/doi:10.5061/dryad.606j6/1
id ftdatacite:10.5061/dryad.606j6/1
record_format openpolar
spelling ftdatacite:10.5061/dryad.606j6/1 2023-05-15T15:55:03+02:00 Custom Perl script for extracting SNPs Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. 2013 https://dx.doi.org/10.5061/dryad.606j6/1 http://datadryad.org/resource/doi:10.5061/dryad.606j6/1 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.606j6 http://creativecommons.org/publicdomain/zero/1.0 CC0 Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics Wapusk National Park Churchill Manitoba Canada Cenozoic Ursus maritimus Ursidae Caniformia Carnivora Eutheria Mammalia Animalia dataset Dataset DataFile 2013 ftdatacite https://doi.org/10.5061/dryad.606j6/1 https://doi.org/10.5061/dryad.606j6 2021-11-05T12:55:41Z Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan. Dataset Churchill Ursus maritimus Wapusk national park DataCite Metadata Store (German National Library of Science and Technology) Canada
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
Ursus maritimus
Ursidae
Caniformia
Carnivora
Eutheria
Mammalia
Animalia
spellingShingle Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
Ursus maritimus
Ursidae
Caniformia
Carnivora
Eutheria
Mammalia
Animalia
Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
Custom Perl script for extracting SNPs
topic_facet Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
Ursus maritimus
Ursidae
Caniformia
Carnivora
Eutheria
Mammalia
Animalia
description Perl program used to extract SNPs. Properly accounts for REFSKIP characters (i.e., "") that result from spliced alignments and seemed to be problematic in more widely available SNP calling packages, such as samtools and varscan.
format Dataset
author Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_facet Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_sort Malenfant, René M.
title Custom Perl script for extracting SNPs
title_short Custom Perl script for extracting SNPs
title_full Custom Perl script for extracting SNPs
title_fullStr Custom Perl script for extracting SNPs
title_full_unstemmed Custom Perl script for extracting SNPs
title_sort custom perl script for extracting snps
publisher Dryad Digital Repository
publishDate 2013
url https://dx.doi.org/10.5061/dryad.606j6/1
http://datadryad.org/resource/doi:10.5061/dryad.606j6/1
geographic Canada
geographic_facet Canada
genre Churchill
Ursus maritimus
Wapusk national park
genre_facet Churchill
Ursus maritimus
Wapusk national park
op_relation https://dx.doi.org/10.5061/dryad.606j6
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.606j6/1
https://doi.org/10.5061/dryad.606j6
_version_ 1766390395042791424

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