Smoothed pairwise genetic differentiation (FST) and overall nucleotide diversity (pi)

Smoothed pairwise genetic differentiation (FST) and overall nucleotide diversity (pi) across bottlenose dolphin RAD loci. Sample pool abbreviations as in description for “Stacks analysis of common bottlenose dolphin RAD sequences.” FST was calculated from nucleotide diversity at each population and...

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Bibliographic Details
Main Author: Cammen, Kristina M.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2015
Subjects:
common bottlenose dolphin
harmful algal bloom
restriction site-associated DNA sequencing
Adaptation
Florida
Gulf of Mexico
Tursiops truncatus
Killer Whale
Killer whale
Online Access:https://dx.doi.org/10.5061/dryad.579kj/5
http://datadryad.org/resource/doi:10.5061/dryad.579kj/5
Description
Summary:Smoothed pairwise genetic differentiation (FST) and overall nucleotide diversity (pi) across bottlenose dolphin RAD loci. Sample pool abbreviations as in description for “Stacks analysis of common bottlenose dolphin RAD sequences.” FST was calculated from nucleotide diversity at each population and across the pooled populations, where nucleotide diversity was calculated using allele counts (see equation 2 in Hohenlohe et al. 2010). Accession numbers refer to scaffolds in the killer whale genome (Oorc_1.1, GCA_000331955.2). Smoothed average FST was calculated using a Gaussian function with theta of 150kb and windows truncated at 3σ from centre in both directions

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