Data from: Chromosome polymorphisms track trans‐Atlantic divergence and secondary contact in Atlantic salmon ...
Pleistocene glaciations drove repeated range contractions and expansions shaping contemporary intraspecific diversity. Atlantic salmon (Salmo salar) in the western and eastern Atlantic diverged >600,000 YBP, with the two lineages isolated in different southern refugia during glacial maxima, drivi...
| Main Authors: | , , , , , , |
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| Format: | Dataset |
| Language: | English |
| Published: |
Dryad
2019
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.4m5d5m9 https://datadryad.org/stash/dataset/doi:10.5061/dryad.4m5d5m9 |
| Summary: | Pleistocene glaciations drove repeated range contractions and expansions shaping contemporary intraspecific diversity. Atlantic salmon (Salmo salar) in the western and eastern Atlantic diverged >600,000 YBP, with the two lineages isolated in different southern refugia during glacial maxima, driving trans-Atlantic genomic and karyotypic divergence. Here, we investigate genomic consequences of glacial isolation and trans-Atlantic secondary contact using 108,870 single nucleotide polymorphisms (SNPs) genotyped in 80 North American and European populations. Throughout North America, we identified extensive inter-individual variation and discrete linkage blocks within and between chromosomes with known trans-Atlantic differences in rearrangements: Ssa01/Ssa23 translocation and Ssa08/Ssa29 fusion. Spatial genetic analyses suggest independence of rearrangements, with Ssa01/Ssa23 showing high European introgression (>50%) in northern populations indicative of post-glacial trans-Atlantic secondary contact, ... : Salmon genotype dataGenotype data for 108K SNPs used in the study for Canadian populations of Atlantic salmon. Other data used in the study were compiled from other work on Norwegian Atlantic salmon (see Barson et al. 2015 Nature for details).Canada_26Pops_Genepop_108K.txt ... |
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