Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ...
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of...
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Online Access: | https://dx.doi.org/10.5061/dryad.29fp0 https://datadryad.org/stash/dataset/doi:10.5061/dryad.29fp0 |
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ftdatacite:10.5061/dryad.29fp0 2024-10-13T14:10:24+00:00 Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. 2015 https://dx.doi.org/10.5061/dryad.29fp0 https://datadryad.org/stash/dataset/doi:10.5061/dryad.29fp0 en eng Dryad https://dx.doi.org/10.1093/jhered/esv081 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 whole genome analysis Rangifer tarandus Conservation genetics and biodiversity Dataset dataset 2015 ftdatacite https://doi.org/10.5061/dryad.29fp010.1093/jhered/esv081 2024-10-01T11:13:55Z Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. ... : Data_file_Russian_ReindeerWhole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. ... Dataset Rangifer tarandus DataCite |
institution |
Open Polar |
collection |
DataCite |
op_collection_id |
ftdatacite |
language |
English |
topic |
whole genome analysis Rangifer tarandus Conservation genetics and biodiversity |
spellingShingle |
whole genome analysis Rangifer tarandus Conservation genetics and biodiversity Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
topic_facet |
whole genome analysis Rangifer tarandus Conservation genetics and biodiversity |
description |
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. ... : Data_file_Russian_ReindeerWhole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. ... |
format |
Dataset |
author |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_facet |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_sort |
Kharzinova, Veronika R. |
title |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
title_short |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
title_full |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
title_fullStr |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
title_full_unstemmed |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus ... |
title_sort |
data from: a study of applicability of snp chips developed for bovine and ovine species to whole-genome analysis of reindeer rangifer tarandus ... |
publisher |
Dryad |
publishDate |
2015 |
url |
https://dx.doi.org/10.5061/dryad.29fp0 https://datadryad.org/stash/dataset/doi:10.5061/dryad.29fp0 |
genre |
Rangifer tarandus |
genre_facet |
Rangifer tarandus |
op_relation |
https://dx.doi.org/10.1093/jhered/esv081 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.29fp010.1093/jhered/esv081 |
_version_ |
1812817661531258880 |