Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ...
We assessed the relationships of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) with high throughput genomic sequencing data with an average coverage of 25X for each species. A total of 1.4 billion 100-bp paired-end reads was assembled using the polar bear an...
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Online Access: | https://dx.doi.org/10.5061/dryad.1qp80 https://datadryad.org/stash/dataset/doi:10.5061/dryad.1qp80 |
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ftdatacite:10.5061/dryad.1qp80 2024-02-04T10:05:09+01:00 Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... Cronin, Matthew A. Rincon, Gonzalo Meredith, Robert W. MacNeil, Michael D. Islas-Trejo, Alma Canovas, Angela Medrano, Juan F. 2013 https://dx.doi.org/10.5061/dryad.1qp80 https://datadryad.org/stash/dataset/doi:10.5061/dryad.1qp80 en eng Dryad https://dx.doi.org/10.1093/jhered/est133 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Ultra-conserved elements polar single nucleotide polymorphism SNP Subject area Molecular systematics and phylogenetics single nucleotide polymorphism SNP Ursus Molecular systematics and phylogenetics brown genomics and gene mapping black Bears Dataset dataset 2013 ftdatacite https://doi.org/10.5061/dryad.1qp8010.1093/jhered/est133 2024-01-05T00:42:33Z We assessed the relationships of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) with high throughput genomic sequencing data with an average coverage of 25X for each species. A total of 1.4 billion 100-bp paired-end reads was assembled using the polar bear and annotated giant panda (Ailuropoda melanoleuca) genome sequences as references. We identified 13.8 million single nucleotide polymorphisms (SNP) in the three species aligned to the polar bear genome. These data indicate that polar bears and brown bears share more SNP with each other than either does with black bears. Concatenation and coalescence-based analysis of consensus sequences of approximately one million base pairs of ultra-conserved elements (UCE) in the nuclear genome resulted in a phylogeny with black bears as the sister group to brown and polar bears, and all brown bears are in a separate clade from polar bears. Genotypes for 162 SNP loci of 336 bears from Alaska and Montana showed that the species ... : BearUCE_with_PartitionsRobNexus file of 996,381 nucleotides of concatenated Ultra Conserved Elements sequences from polar, brown, and black bears and other carnivora.162 SNP genotpesGenotypes for 162 sngle nucleotide polymorphisms for 336 bears. ... Dataset Ursus maritimus Alaska DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Ultra-conserved elements polar single nucleotide polymorphism SNP Subject area Molecular systematics and phylogenetics single nucleotide polymorphism SNP Ursus Molecular systematics and phylogenetics brown genomics and gene mapping black Bears |
spellingShingle |
Ultra-conserved elements polar single nucleotide polymorphism SNP Subject area Molecular systematics and phylogenetics single nucleotide polymorphism SNP Ursus Molecular systematics and phylogenetics brown genomics and gene mapping black Bears Cronin, Matthew A. Rincon, Gonzalo Meredith, Robert W. MacNeil, Michael D. Islas-Trejo, Alma Canovas, Angela Medrano, Juan F. Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
topic_facet |
Ultra-conserved elements polar single nucleotide polymorphism SNP Subject area Molecular systematics and phylogenetics single nucleotide polymorphism SNP Ursus Molecular systematics and phylogenetics brown genomics and gene mapping black Bears |
description |
We assessed the relationships of polar bears (Ursus maritimus), brown bears (U. arctos), and black bears (U. americanus) with high throughput genomic sequencing data with an average coverage of 25X for each species. A total of 1.4 billion 100-bp paired-end reads was assembled using the polar bear and annotated giant panda (Ailuropoda melanoleuca) genome sequences as references. We identified 13.8 million single nucleotide polymorphisms (SNP) in the three species aligned to the polar bear genome. These data indicate that polar bears and brown bears share more SNP with each other than either does with black bears. Concatenation and coalescence-based analysis of consensus sequences of approximately one million base pairs of ultra-conserved elements (UCE) in the nuclear genome resulted in a phylogeny with black bears as the sister group to brown and polar bears, and all brown bears are in a separate clade from polar bears. Genotypes for 162 SNP loci of 336 bears from Alaska and Montana showed that the species ... : BearUCE_with_PartitionsRobNexus file of 996,381 nucleotides of concatenated Ultra Conserved Elements sequences from polar, brown, and black bears and other carnivora.162 SNP genotpesGenotypes for 162 sngle nucleotide polymorphisms for 336 bears. ... |
format |
Dataset |
author |
Cronin, Matthew A. Rincon, Gonzalo Meredith, Robert W. MacNeil, Michael D. Islas-Trejo, Alma Canovas, Angela Medrano, Juan F. |
author_facet |
Cronin, Matthew A. Rincon, Gonzalo Meredith, Robert W. MacNeil, Michael D. Islas-Trejo, Alma Canovas, Angela Medrano, Juan F. |
author_sort |
Cronin, Matthew A. |
title |
Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
title_short |
Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
title_full |
Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
title_fullStr |
Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
title_full_unstemmed |
Data from: Molecular phylogeny and SNP variation of polar bears (Ursus maritimus), brown bears (U. arctos) and black bears (U. americanus) derived from genome sequences ... |
title_sort |
data from: molecular phylogeny and snp variation of polar bears (ursus maritimus), brown bears (u. arctos) and black bears (u. americanus) derived from genome sequences ... |
publisher |
Dryad |
publishDate |
2013 |
url |
https://dx.doi.org/10.5061/dryad.1qp80 https://datadryad.org/stash/dataset/doi:10.5061/dryad.1qp80 |
genre |
Ursus maritimus Alaska |
genre_facet |
Ursus maritimus Alaska |
op_relation |
https://dx.doi.org/10.1093/jhered/est133 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.1qp8010.1093/jhered/est133 |
_version_ |
1789974130383126528 |