Black grouse autosomal heterozygous sites

A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth b...

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Bibliographic Details
Main Authors: Kozma, Radoslav, Melsted, Páll, Magnússon, Kristinn P., Höglund, Jacob
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2015
Subjects:
Effective population size
Climate hange
PSMC
Holarctic
Pleistocene
Holocene
Tetrao tetrix
Lagopus lagopus
Lagopus muta
Tetraoninae
Online Access:https://dx.doi.org/10.5061/dryad.11p3v/7
http://datadryad.org/resource/doi:10.5061/dryad.11p3v/7
id ftdatacite:10.5061/dryad.11p3v/7
record_format openpolar
spelling ftdatacite:10.5061/dryad.11p3v/7 2023-05-15T17:06:22+02:00 Black grouse autosomal heterozygous sites Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob 2015 https://dx.doi.org/10.5061/dryad.11p3v/7 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/7 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.11p3v http://creativecommons.org/publicdomain/zero/1.0 CC0 Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae dataset Dataset DataFile 2015 ftdatacite https://doi.org/10.5061/dryad.11p3v/7 https://doi.org/10.5061/dryad.11p3v 2021-11-05T12:55:41Z A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 28 and 171 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function. Dataset Lagopus muta DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Effective population size
Climate hange
PSMC
Holarctic
Pleistocene
Holocene
Tetrao tetrix
Lagopus lagopus
Lagopus muta
Tetraoninae
spellingShingle Effective population size
Climate hange
PSMC
Holarctic
Pleistocene
Holocene
Tetrao tetrix
Lagopus lagopus
Lagopus muta
Tetraoninae
Kozma, Radoslav
Melsted, Páll
Magnússon, Kristinn P.
Höglund, Jacob
Black grouse autosomal heterozygous sites
topic_facet Effective population size
Climate hange
PSMC
Holarctic
Pleistocene
Holocene
Tetrao tetrix
Lagopus lagopus
Lagopus muta
Tetraoninae
description A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 28 and 171 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function.
format Dataset
author Kozma, Radoslav
Melsted, Páll
Magnússon, Kristinn P.
Höglund, Jacob
author_facet Kozma, Radoslav
Melsted, Páll
Magnússon, Kristinn P.
Höglund, Jacob
author_sort Kozma, Radoslav
title Black grouse autosomal heterozygous sites
title_short Black grouse autosomal heterozygous sites
title_full Black grouse autosomal heterozygous sites
title_fullStr Black grouse autosomal heterozygous sites
title_full_unstemmed Black grouse autosomal heterozygous sites
title_sort black grouse autosomal heterozygous sites
publisher Dryad Digital Repository
publishDate 2015
url https://dx.doi.org/10.5061/dryad.11p3v/7
http://datadryad.org/resource/doi:10.5061/dryad.11p3v/7
genre Lagopus muta
genre_facet Lagopus muta
op_relation https://dx.doi.org/10.5061/dryad.11p3v
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.11p3v/7
https://doi.org/10.5061/dryad.11p3v
_version_ 1766061493455945728

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