Black grouse autosomal heterozygous sites
A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth b...
Main Authors: | , , , |
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Format: | Dataset |
Language: | unknown |
Published: |
Dryad Digital Repository
2015
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Subjects: | |
Online Access: | https://dx.doi.org/10.5061/dryad.11p3v/7 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/7 |
Summary: | A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 28 and 171 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function. |
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