Rock ptarmigan autosomal heterozygous sites
A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth...
| Main Authors: | , , , |
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| Format: | Dataset |
| Language: | unknown |
| Published: |
Dryad Digital Repository
2015
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.11p3v/6 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/6 |
| _version_ | 1821574387265961984 |
|---|---|
| author | Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob |
| author_facet | Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob |
| author_sort | Kozma, Radoslav |
| collection | DataCite |
| description | A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 33 and 202 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function. |
| format | Dataset |
| genre | Lagopus muta rock ptarmigan |
| genre_facet | Lagopus muta rock ptarmigan |
| id | ftdatacite:10.5061/dryad.11p3v/6 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftdatacite |
| op_doi | https://doi.org/10.5061/dryad.11p3v/6 https://doi.org/10.5061/dryad.11p3v |
| op_relation | https://dx.doi.org/10.5061/dryad.11p3v |
| op_rights | http://creativecommons.org/publicdomain/zero/1.0 |
| op_rightsnorm | CC0 |
| publishDate | 2015 |
| publisher | Dryad Digital Repository |
| record_format | openpolar |
| spelling | ftdatacite:10.5061/dryad.11p3v/6 2025-01-16T22:57:32+00:00 Rock ptarmigan autosomal heterozygous sites Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob 2015 https://dx.doi.org/10.5061/dryad.11p3v/6 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/6 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.11p3v http://creativecommons.org/publicdomain/zero/1.0 CC0 Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae dataset Dataset DataFile 2015 ftdatacite https://doi.org/10.5061/dryad.11p3v/6 https://doi.org/10.5061/dryad.11p3v 2021-11-05T12:55:41Z A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 33 and 202 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function. Dataset Lagopus muta rock ptarmigan DataCite |
| spellingShingle | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob Rock ptarmigan autosomal heterozygous sites |
| title | Rock ptarmigan autosomal heterozygous sites |
| title_full | Rock ptarmigan autosomal heterozygous sites |
| title_fullStr | Rock ptarmigan autosomal heterozygous sites |
| title_full_unstemmed | Rock ptarmigan autosomal heterozygous sites |
| title_short | Rock ptarmigan autosomal heterozygous sites |
| title_sort | rock ptarmigan autosomal heterozygous sites |
| topic | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae |
| topic_facet | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae |
| url | https://dx.doi.org/10.5061/dryad.11p3v/6 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/6 |