Rock ptarmigan autosomal consensus sequence

• Main Authors: Kozma, Radoslav, Melsted, Páll, Magnússon, Kristinn P., Höglund, Jacob
• Format: Dataset
• Language: unknown
• Published: Dryad Digital Repository 2015
• Subjects: Effective population size; Climate hange; PSMC; Holarctic; Pleistocene; Holocene; Tetrao tetrix; Lagopus lagopus; Lagopus muta; Tetraoninae; rock ptarmigan
• Online Access: https://dx.doi.org/10.5061/dryad.11p3v/2; http://datadryad.org/resource/doi:10.5061/dryad.11p3v/2

Rock ptarmigan autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (33) and maximum read depth (-D) set to twice the mean genome coverage (202)). All non-autosomal sites were discarded.