Rock ptarmigan autosomal consensus sequence
Rock ptarmigan autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to...
| Main Authors: | , , , |
|---|---|
| Format: | Dataset |
| Language: | unknown |
| Published: |
Dryad Digital Repository
2015
|
| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.11p3v/2 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/2 |
| _version_ | 1821574391910105088 |
|---|---|
| author | Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob |
| author_facet | Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob |
| author_sort | Kozma, Radoslav |
| collection | DataCite |
| description | Rock ptarmigan autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (33) and maximum read depth (-D) set to twice the mean genome coverage (202)). All non-autosomal sites were discarded. |
| format | Dataset |
| genre | Lagopus muta rock ptarmigan |
| genre_facet | Lagopus muta rock ptarmigan |
| id | ftdatacite:10.5061/dryad.11p3v/2 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftdatacite |
| op_doi | https://doi.org/10.5061/dryad.11p3v/2 https://doi.org/10.5061/dryad.11p3v |
| op_relation | https://dx.doi.org/10.5061/dryad.11p3v |
| op_rights | http://creativecommons.org/publicdomain/zero/1.0 |
| op_rightsnorm | CC0 |
| publishDate | 2015 |
| publisher | Dryad Digital Repository |
| record_format | openpolar |
| spelling | ftdatacite:10.5061/dryad.11p3v/2 2025-01-16T22:57:32+00:00 Rock ptarmigan autosomal consensus sequence Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob 2015 https://dx.doi.org/10.5061/dryad.11p3v/2 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/2 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.11p3v http://creativecommons.org/publicdomain/zero/1.0 CC0 Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae dataset Dataset DataFile 2015 ftdatacite https://doi.org/10.5061/dryad.11p3v/2 https://doi.org/10.5061/dryad.11p3v 2021-11-05T12:55:41Z Rock ptarmigan autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (33) and maximum read depth (-D) set to twice the mean genome coverage (202)). All non-autosomal sites were discarded. Dataset Lagopus muta rock ptarmigan DataCite |
| spellingShingle | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae Kozma, Radoslav Melsted, Páll Magnússon, Kristinn P. Höglund, Jacob Rock ptarmigan autosomal consensus sequence |
| title | Rock ptarmigan autosomal consensus sequence |
| title_full | Rock ptarmigan autosomal consensus sequence |
| title_fullStr | Rock ptarmigan autosomal consensus sequence |
| title_full_unstemmed | Rock ptarmigan autosomal consensus sequence |
| title_short | Rock ptarmigan autosomal consensus sequence |
| title_sort | rock ptarmigan autosomal consensus sequence |
| topic | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae |
| topic_facet | Effective population size Climate hange PSMC Holarctic Pleistocene Holocene Tetrao tetrix Lagopus lagopus Lagopus muta Tetraoninae |
| url | https://dx.doi.org/10.5061/dryad.11p3v/2 http://datadryad.org/resource/doi:10.5061/dryad.11p3v/2 |