Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ...
Marine systems have traditionally been thought of as “open” with few barriers to gene flow. In particular, many marine organisms in the Southern Ocean purportedly possess circumpolar distributions that have rarely been well verified. Here, we use the highly abundant and endemic Southern Ocean brittl...
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ftdatacite:10.5061/dryad.0k1r0 2024-10-13T14:02:22+00:00 Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... Galaska, Matthew P. Sands, Chester J. Santos, Scott R. Mahon, Andrew R. Halanych, Kenneth M. 2017 https://dx.doi.org/10.5061/dryad.0k1r0 https://datadryad.org/stash/dataset/doi:10.5061/dryad.0k1r0 en eng Dryad https://dx.doi.org/10.1002/ece3.2617 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Ophionotus victoriae RAD Ophiuroid Dataset dataset 2017 ftdatacite https://doi.org/10.5061/dryad.0k1r010.1002/ece3.2617 2024-10-01T11:13:55Z Marine systems have traditionally been thought of as “open” with few barriers to gene flow. In particular, many marine organisms in the Southern Ocean purportedly possess circumpolar distributions that have rarely been well verified. Here, we use the highly abundant and endemic Southern Ocean brittle star Ophionotus victoriae to examine genetic structure and determine whether barriers to gene flow have existed around the Antarctic continent. Ophionotus victoriae possesses feeding planktotrophic larvae with presumed high dispersal capability, but a previous study revealed genetic structure along the Antarctic Peninsula. To test the extent of genetic differentiation within O. victoriae, we sampled from the Ross Sea through the eastern Weddell Sea. Whereas two mitochondrial DNA markers (16S rDNA and COI) were employed to allow comparison to earlier work, a 2b-RAD single-nucleotide polymorphism (SNP) approach allowed sampling of loci across the genome. Mitochondrial data from 414 individuals suggested three ... : 2b-RAD STRUCTURE alignment of Ophionotus victoriae (Meyer)1,999 bi-allelic SNP loci using Dr. Eli Meyer's (Oregon State University) scripts which can be found at (https://github.com/Eli-Meyer)Ophionotus_Meyer_pipeline.stru2b-RAD STRUCTURE alignment of Ophionotus victoriae (STACKS)1,739 bi-allelic SNP loci using using the STACKS software package.Ophionotus_STACKS.struOphionotus_cleaned_fastaCompressed fasta files that have been screened for quality, size and presence of the AlfI restriction site. This data is ready for further processing through STACKS software, Eli Meyer's (Oregon State University) scripts (https://github.com/Eli-Meyer) or through custom software. ... Dataset Antarc* Antarctic Antarctic Peninsula Ross Sea Southern Ocean Weddell Sea DataCite Antarctic Antarctic Peninsula Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea |
institution |
Open Polar |
collection |
DataCite |
op_collection_id |
ftdatacite |
language |
English |
topic |
Ophionotus victoriae RAD Ophiuroid |
spellingShingle |
Ophionotus victoriae RAD Ophiuroid Galaska, Matthew P. Sands, Chester J. Santos, Scott R. Mahon, Andrew R. Halanych, Kenneth M. Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
topic_facet |
Ophionotus victoriae RAD Ophiuroid |
description |
Marine systems have traditionally been thought of as “open” with few barriers to gene flow. In particular, many marine organisms in the Southern Ocean purportedly possess circumpolar distributions that have rarely been well verified. Here, we use the highly abundant and endemic Southern Ocean brittle star Ophionotus victoriae to examine genetic structure and determine whether barriers to gene flow have existed around the Antarctic continent. Ophionotus victoriae possesses feeding planktotrophic larvae with presumed high dispersal capability, but a previous study revealed genetic structure along the Antarctic Peninsula. To test the extent of genetic differentiation within O. victoriae, we sampled from the Ross Sea through the eastern Weddell Sea. Whereas two mitochondrial DNA markers (16S rDNA and COI) were employed to allow comparison to earlier work, a 2b-RAD single-nucleotide polymorphism (SNP) approach allowed sampling of loci across the genome. Mitochondrial data from 414 individuals suggested three ... : 2b-RAD STRUCTURE alignment of Ophionotus victoriae (Meyer)1,999 bi-allelic SNP loci using Dr. Eli Meyer's (Oregon State University) scripts which can be found at (https://github.com/Eli-Meyer)Ophionotus_Meyer_pipeline.stru2b-RAD STRUCTURE alignment of Ophionotus victoriae (STACKS)1,739 bi-allelic SNP loci using using the STACKS software package.Ophionotus_STACKS.struOphionotus_cleaned_fastaCompressed fasta files that have been screened for quality, size and presence of the AlfI restriction site. This data is ready for further processing through STACKS software, Eli Meyer's (Oregon State University) scripts (https://github.com/Eli-Meyer) or through custom software. ... |
format |
Dataset |
author |
Galaska, Matthew P. Sands, Chester J. Santos, Scott R. Mahon, Andrew R. Halanych, Kenneth M. |
author_facet |
Galaska, Matthew P. Sands, Chester J. Santos, Scott R. Mahon, Andrew R. Halanych, Kenneth M. |
author_sort |
Galaska, Matthew P. |
title |
Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
title_short |
Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
title_full |
Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
title_fullStr |
Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
title_full_unstemmed |
Data from: Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single nucleotide polymorphism data ... |
title_sort |
data from: geographic structure in the southern ocean circumpolar brittle star ophionotus victoriae (ophiuridae) revealed from mtdna and single nucleotide polymorphism data ... |
publisher |
Dryad |
publishDate |
2017 |
url |
https://dx.doi.org/10.5061/dryad.0k1r0 https://datadryad.org/stash/dataset/doi:10.5061/dryad.0k1r0 |
geographic |
Antarctic Antarctic Peninsula Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea |
geographic_facet |
Antarctic Antarctic Peninsula Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea |
genre |
Antarc* Antarctic Antarctic Peninsula Ross Sea Southern Ocean Weddell Sea |
genre_facet |
Antarc* Antarctic Antarctic Peninsula Ross Sea Southern Ocean Weddell Sea |
op_relation |
https://dx.doi.org/10.1002/ece3.2617 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.0k1r010.1002/ece3.2617 |
_version_ |
1812816692508622848 |