Estimation and simulation of foraging trips in land-based marine predators

• Main Authors: Michelot, Théo, Langrock, Roland, Bestley, Sophie, Jonsen, Ian D., Photopoulou, Theoni, Patterson, Toby A.
• Format: Report
• Language: unknown
• Published: arXiv 2016
• Subjects: Quantitative Methods q-bio.QM; Applications stat.AP; FOS Biological sciences; FOS Computer and information sciences; Southern Ocean; Kerguelen; Kerguelen Island; Elephant Seals; Mirounga leonina; Southern Elephant Seals
• Online Access: https://dx.doi.org/10.48550/arxiv.1610.06953; https://arxiv.org/abs/1610.06953

The behaviour of colony-based marine predators is the focus of much research globally. Large telemetry and tracking data sets have been collected for this group of animals, and are accompanied by many theoretical studies of optimal foraging strategies. However, relatively few studies have detailed statistical methods for inferring behaviours in central place foraging trips. In this paper we describe an approach based on hidden Markov models, which splits foraging trips into segments labelled as "outbound", "search", "forage", and "inbound". By structuring the hidden Markov model transition matrix appropriately, the model naturally handles the sequence of behaviours within a foraging trip. Additionally, by structuring the model in this way, we are able to develop realistic simulations from the fitted model. We demonstrate our approach on data from southern elephant seals (Mirounga leonina) tagged on Kerguelen Island in the Southern Ocean. We discuss the differences between our 4-state model and the widely used 2-state model, and the advantages and disadvantages of employing a more complex model.