Microbial ecology and biogeography of the Southern Ocean
The biogeographic distribution of microorganisms is an important part of their ecology, as it is both a cause and a consequence of their interactions with environmental factors. In the Southern Ocean (SO), physical oceanographic features such as water masses and their circulation are closely associa...
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UNSW Sydney
2013
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Online Access: | https://dx.doi.org/10.26190/unsworks/16285 http://hdl.handle.net/1959.4/52823 |
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ftdatacite:10.26190/unsworks/16285 2023-05-15T18:25:03+02:00 Microbial ecology and biogeography of the Southern Ocean Wilkins, David 2013 https://dx.doi.org/10.26190/unsworks/16285 http://hdl.handle.net/1959.4/52823 unknown UNSW Sydney https://creativecommons.org/licenses/by-nc-nd/3.0/au/ cc by-nc-nd 3.0 CC-BY-NC-ND Southern Ocean Biogeography Microbial ecology Metagenomics Advection Polar Front Dissertation thesis Thesis doctoral thesis 2013 ftdatacite https://doi.org/10.26190/unsworks/16285 2022-04-01T18:54:58Z The biogeographic distribution of microorganisms is an important part of their ecology, as it is both a cause and a consequence of their interactions with environmental factors. In the Southern Ocean (SO), physical oceanographic features such as water masses and their circulation are closely associated with microbial biogeography, but this relationship has not been previously described on a large scale and at the whole-community level. As climate change continues to influence the physical structure of the SO, and as marine microorganisms are key drivers of many global ecosystem processes, the need to understand this system has become increasingly important. This study used shotgun metagenomic sequencing and bioinformatic analysis to describe the taxonomic composition and functional potential of surface microbial communities along a latitudinal transect of the SO, and test the hypothesis that the Polar Front (PF), a major oceanographic feature of the SO, is a biogeographic barrier. This hypothesis was confirmed on both the taxonomic and functional levels. Confirming and extending previous findings, microbial communities south of the PF reflected greater nutrient availability, particularly in the form of high molecular weight phytoplankton byproducts, while communities to the north suggested a more oligotrophic lifestyle. Further analysis of samples associated with this study suggested a role for advection (physical transport) of microbes by ocean circulation in shaping their biogeographic distribution, a mechanism frequently invoked to explain observations in microbial ecology but never directly tested. To test this hypothesis, microorganisms were sampled on a second latitudinal transect including samples from the surface to 5800 m depth, representing all major water masses of the SO. Tag pyrosequencing of 16S rRNA genes was used to construct taxonomic profiles for each sample, and these were compared to the computer-simulated advection of inertial particles, with the effects of environmental selection and spatial separation controlled for. Advection and taxonomic distance were well correlated, suggesting advection contributes to the variance in community composition across the SO. This study provides the first direct and quantitative support for an advection effect , and indicates that everything is everywhere, but, the environment selects is an incomplete description of marine microbial biogeography. Doctoral or Postdoctoral Thesis Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) Southern Ocean |
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DataCite Metadata Store (German National Library of Science and Technology) |
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topic |
Southern Ocean Biogeography Microbial ecology Metagenomics Advection Polar Front |
spellingShingle |
Southern Ocean Biogeography Microbial ecology Metagenomics Advection Polar Front Wilkins, David Microbial ecology and biogeography of the Southern Ocean |
topic_facet |
Southern Ocean Biogeography Microbial ecology Metagenomics Advection Polar Front |
description |
The biogeographic distribution of microorganisms is an important part of their ecology, as it is both a cause and a consequence of their interactions with environmental factors. In the Southern Ocean (SO), physical oceanographic features such as water masses and their circulation are closely associated with microbial biogeography, but this relationship has not been previously described on a large scale and at the whole-community level. As climate change continues to influence the physical structure of the SO, and as marine microorganisms are key drivers of many global ecosystem processes, the need to understand this system has become increasingly important. This study used shotgun metagenomic sequencing and bioinformatic analysis to describe the taxonomic composition and functional potential of surface microbial communities along a latitudinal transect of the SO, and test the hypothesis that the Polar Front (PF), a major oceanographic feature of the SO, is a biogeographic barrier. This hypothesis was confirmed on both the taxonomic and functional levels. Confirming and extending previous findings, microbial communities south of the PF reflected greater nutrient availability, particularly in the form of high molecular weight phytoplankton byproducts, while communities to the north suggested a more oligotrophic lifestyle. Further analysis of samples associated with this study suggested a role for advection (physical transport) of microbes by ocean circulation in shaping their biogeographic distribution, a mechanism frequently invoked to explain observations in microbial ecology but never directly tested. To test this hypothesis, microorganisms were sampled on a second latitudinal transect including samples from the surface to 5800 m depth, representing all major water masses of the SO. Tag pyrosequencing of 16S rRNA genes was used to construct taxonomic profiles for each sample, and these were compared to the computer-simulated advection of inertial particles, with the effects of environmental selection and spatial separation controlled for. Advection and taxonomic distance were well correlated, suggesting advection contributes to the variance in community composition across the SO. This study provides the first direct and quantitative support for an advection effect , and indicates that everything is everywhere, but, the environment selects is an incomplete description of marine microbial biogeography. |
format |
Doctoral or Postdoctoral Thesis |
author |
Wilkins, David |
author_facet |
Wilkins, David |
author_sort |
Wilkins, David |
title |
Microbial ecology and biogeography of the Southern Ocean |
title_short |
Microbial ecology and biogeography of the Southern Ocean |
title_full |
Microbial ecology and biogeography of the Southern Ocean |
title_fullStr |
Microbial ecology and biogeography of the Southern Ocean |
title_full_unstemmed |
Microbial ecology and biogeography of the Southern Ocean |
title_sort |
microbial ecology and biogeography of the southern ocean |
publisher |
UNSW Sydney |
publishDate |
2013 |
url |
https://dx.doi.org/10.26190/unsworks/16285 http://hdl.handle.net/1959.4/52823 |
geographic |
Southern Ocean |
geographic_facet |
Southern Ocean |
genre |
Southern Ocean |
genre_facet |
Southern Ocean |
op_rights |
https://creativecommons.org/licenses/by-nc-nd/3.0/au/ cc by-nc-nd 3.0 |
op_rightsnorm |
CC-BY-NC-ND |
op_doi |
https://doi.org/10.26190/unsworks/16285 |
_version_ |
1766206198982377472 |