Filarioidea NanoClust Database ...

• Main Author: Huggins, Lucas
• Format: Dataset
• Language: unknown
• Published: University of Melbourne 2023
• Subjects: Veterinary parasitology; Canis lupus
• Online Access: https://dx.doi.org/10.26188/22153730.v1; https://melbourne.figshare.com/articles/dataset/Filarioidea_NanoClust_Database/22153730/1

Construction of Filarial Worm and Apicomplexan Haemoparasite Databases for NanoCLUST: Within NCBI nucleotide the filarial worm COI gene Db was constructed using the search terms: (((((((((((cytochrome c oxidase subunit 1[Title]) OR cytochrome c oxidase subunit I) OR cytochrome oxidase subunit 1) OR cytochrome oxidase subunit I) OR COX1) OR CO1) OR COI)) AND txid6295[Organism:exp])) AND 100:100000[Sequence Length]) And the NCBI accession NR_029255.1 ( Aliivibrio fischeri ) required for identification of our positive control. Additionally a second filarial worm Db was constructed from the same sequences downloaded using the aforementioned search terms with the inclusion of the dog genome GCF_014441545.1 ( Canis lupus familiaris ). For construction of the apicomplexan 18S rRNA gene Db the search terms used were: ((((((18S ribosomal RNA[Title]) OR 18S rRNA[Title]) OR ribosomal RNA[Title]) OR SSU rRNA[Title]) OR SSU ribosomal RNA[Title]) AND txid5794[Organism]) AND 200:10000[Sequence Length] Plus the addition of ...