Esox lucius isolate:CL-BC-CA-002 Genome sequencing

• Main Author: BGI
• Format: Dataset
• Language: English
• Published: CNGB 2014
• Subjects: Genome sequencing and assembly; Multiisolate; Atlantic salmon
• Online Access: https://dx.doi.org/10.26036/cnphis0001573; https://db.cngb.org/search/project/PRJNA221548/

The pike (Esox lucius) is a northern hemisphere, circumpolar, fresh water species that is typically the top predator in many lakes. It is an important northern recreational fishery. Pike are morphologically diverse and highly adaptable. Despite their wide distribution, pike populations have low levels of polymorphism and divergence, indicative of a recent common ancestor. Pike often function as sentinel species to monitor pollutants in northern waters. Mitochondrial studies have shown that Escosiformes is the closest living order to Salmoniformes. Esociformes, an old lineage with fossils dating back to 70MYA, contains 10 species (pike, muskellunge and mudminnows) of which most literature concerns pike. The genome size for pike is 1.1pg and its karyotype is 2N=50 NF=50, similar to ancestral karyotypes of many teleosts (2N=48-50, FN=48-50). This compares to the much larger Atlantic salmon karyotype of 2N=56-60, NF=74 and genome size =3.1pg. Recent studies are consistent with the pike having a pre-WGD genome and being much closer to salmon than other fish species (zebrafish, medaka, fugu or stickleback).