Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections
Supplementary figure 2 Effect of extended crosslinking on antibody penetration in single cultured cells (MCF10A, non-transformed immortalized breast epithelium). Cells were immunostained for detection of 53BP1 nuclear protein. A minor fraction of the protein is also present in the cytoplasm. Supplem...
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ftdatacite:10.25402/btn.13730758.v1 2023-05-15T17:54:04+02:00 Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections Cattoretti, Giorgio Bolognesi, Maddalena Mascadri, Francesco Faretta, Mario Bosisio, Francesca 2021 https://dx.doi.org/10.25402/btn.13730758.v1 https://future-science-group.figshare.com/articles/figure/Supplementary_Figure_2_Antibodies_validated_for_routinely_processed_tissue_unpredictably_stain_frozen_tissue_sections/13730758/1 unknown Future Science Group https://dx.doi.org/10.2144/btn-2020-0149 https://dx.doi.org/10.25402/btn.13730758 Creative Commons Attribution Non Commercial No Derivatives 4.0 International https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode cc-by-nc-nd-4.0 CC-BY-NC-ND 110799 Immunology not elsewhere classified FOS Clinical medicine Image Figure graphic ImageObject 2021 ftdatacite https://doi.org/10.25402/btn.13730758.v1 https://doi.org/10.2144/btn-2020-0149 https://doi.org/10.25402/btn.13730758 2021-11-05T12:55:41Z Supplementary figure 2 Effect of extended crosslinking on antibody penetration in single cultured cells (MCF10A, non-transformed immortalized breast epithelium). Cells were immunostained for detection of 53BP1 nuclear protein. A minor fraction of the protein is also present in the cytoplasm. Supplementary Material and Methods for Supplementary figure 2: Cell culture, Immunostaining and Microscopy MCF10A non transformed immortalized breast epithelium cells were grown in DMEM 1 Ham’s F12 Medium (1:1) containing 5% FBS, 2 mM glutamine, 50 ng/ml penicillin/streptomycin (all from Lonza, Switzerland), cholera toxin (Sigma-Aldrich, MO), 10 µg/ml insulin (Roche, Switzer- land), 100 µg/ml hydrocortisone (Sigma-Aldrich), and 20 ng/ ml EGF (PeproTech, NJ) at 378Cin 5%CO2. Cells were grown on glass coverslips coated with 0.5% gelatin (wt/vol) in PBS. Exponentially growing cells were fixed in 4% paraformaldehyde (wt/vol) at room temperature (RT) for 10 min (standard conditions), 4h and for an overnight (18 h) to detect effects of crosslinking duration on immune-stainability. Fixed MCF10A cells were washed and permeabilized for 10 min in a permeabilization buffer containing 0.1% Triton X- 100 (vol/vol) in PBS. Coverslips were then immersed for 30 min in a blocking solution, 5% BSA (wt/vol) in PBS, then incubated for 1 h at RT with rabbit anti 53BP1 primary antibody (ab36823, Abcam) diluted 1 to 100 in blocking solution. After washes cells were incubated with Alexa 647-conjugated donkey anti rabbit secondary antibody (Jackson ImmunoResearch). Washed coverslips were then stained with DAPI (ThermoFisher) and mounted in Mowiol-containing mounting media for widefield fluorescence microscopy analysis. Images were acquired with a Nikon Ti2 inverted microscope equipped with an Orca Flash 3 camera (Hamamatsu) employing a 20x 0.75 NA objective. Confocal stacks were acquired to eliminate out-of-focus signals employing an A1R confocal scanhead with a 60x oil immersion 1.4 NA objective. Acquired images have been processed by the open-source ImageJ software (W. Rasband, NIH, http://imagej.nih.gov/ij). Widefield images were corrected by background subtraction using the Rolling-Ball algorithm included in the program. Intensity has been measured by thresholding whole cells and reporting the mean-pixel value. Nucleus vs Cytoplasm Ratio has been calculated measuring respectively the mean pixel values on a nuclear and cytoplasmic Region Of Interest for each cell. Maximum Z projection have been produced in ImageJ to provide a representation of the whole cell volume. Still Image Orca DataCite Metadata Store (German National Library of Science and Technology) Aldrich ENVELOPE(158.217,158.217,-80.117,-80.117) Triton ENVELOPE(-55.615,-55.615,49.517,49.517) |
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DataCite Metadata Store (German National Library of Science and Technology) |
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110799 Immunology not elsewhere classified FOS Clinical medicine |
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110799 Immunology not elsewhere classified FOS Clinical medicine Cattoretti, Giorgio Bolognesi, Maddalena Mascadri, Francesco Faretta, Mario Bosisio, Francesca Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
topic_facet |
110799 Immunology not elsewhere classified FOS Clinical medicine |
description |
Supplementary figure 2 Effect of extended crosslinking on antibody penetration in single cultured cells (MCF10A, non-transformed immortalized breast epithelium). Cells were immunostained for detection of 53BP1 nuclear protein. A minor fraction of the protein is also present in the cytoplasm. Supplementary Material and Methods for Supplementary figure 2: Cell culture, Immunostaining and Microscopy MCF10A non transformed immortalized breast epithelium cells were grown in DMEM 1 Ham’s F12 Medium (1:1) containing 5% FBS, 2 mM glutamine, 50 ng/ml penicillin/streptomycin (all from Lonza, Switzerland), cholera toxin (Sigma-Aldrich, MO), 10 µg/ml insulin (Roche, Switzer- land), 100 µg/ml hydrocortisone (Sigma-Aldrich), and 20 ng/ ml EGF (PeproTech, NJ) at 378Cin 5%CO2. Cells were grown on glass coverslips coated with 0.5% gelatin (wt/vol) in PBS. Exponentially growing cells were fixed in 4% paraformaldehyde (wt/vol) at room temperature (RT) for 10 min (standard conditions), 4h and for an overnight (18 h) to detect effects of crosslinking duration on immune-stainability. Fixed MCF10A cells were washed and permeabilized for 10 min in a permeabilization buffer containing 0.1% Triton X- 100 (vol/vol) in PBS. Coverslips were then immersed for 30 min in a blocking solution, 5% BSA (wt/vol) in PBS, then incubated for 1 h at RT with rabbit anti 53BP1 primary antibody (ab36823, Abcam) diluted 1 to 100 in blocking solution. After washes cells were incubated with Alexa 647-conjugated donkey anti rabbit secondary antibody (Jackson ImmunoResearch). Washed coverslips were then stained with DAPI (ThermoFisher) and mounted in Mowiol-containing mounting media for widefield fluorescence microscopy analysis. Images were acquired with a Nikon Ti2 inverted microscope equipped with an Orca Flash 3 camera (Hamamatsu) employing a 20x 0.75 NA objective. Confocal stacks were acquired to eliminate out-of-focus signals employing an A1R confocal scanhead with a 60x oil immersion 1.4 NA objective. Acquired images have been processed by the open-source ImageJ software (W. Rasband, NIH, http://imagej.nih.gov/ij). Widefield images were corrected by background subtraction using the Rolling-Ball algorithm included in the program. Intensity has been measured by thresholding whole cells and reporting the mean-pixel value. Nucleus vs Cytoplasm Ratio has been calculated measuring respectively the mean pixel values on a nuclear and cytoplasmic Region Of Interest for each cell. Maximum Z projection have been produced in ImageJ to provide a representation of the whole cell volume. |
format |
Still Image |
author |
Cattoretti, Giorgio Bolognesi, Maddalena Mascadri, Francesco Faretta, Mario Bosisio, Francesca |
author_facet |
Cattoretti, Giorgio Bolognesi, Maddalena Mascadri, Francesco Faretta, Mario Bosisio, Francesca |
author_sort |
Cattoretti, Giorgio |
title |
Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
title_short |
Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
title_full |
Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
title_fullStr |
Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
title_full_unstemmed |
Supplementary Figure 2: Antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
title_sort |
supplementary figure 2: antibodies validated for routinely processed tissue unpredictably stain frozen tissue sections |
publisher |
Future Science Group |
publishDate |
2021 |
url |
https://dx.doi.org/10.25402/btn.13730758.v1 https://future-science-group.figshare.com/articles/figure/Supplementary_Figure_2_Antibodies_validated_for_routinely_processed_tissue_unpredictably_stain_frozen_tissue_sections/13730758/1 |
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ENVELOPE(158.217,158.217,-80.117,-80.117) ENVELOPE(-55.615,-55.615,49.517,49.517) |
geographic |
Aldrich Triton |
geographic_facet |
Aldrich Triton |
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Orca |
genre_facet |
Orca |
op_relation |
https://dx.doi.org/10.2144/btn-2020-0149 https://dx.doi.org/10.25402/btn.13730758 |
op_rights |
Creative Commons Attribution Non Commercial No Derivatives 4.0 International https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode cc-by-nc-nd-4.0 |
op_rightsnorm |
CC-BY-NC-ND |
op_doi |
https://doi.org/10.25402/btn.13730758.v1 https://doi.org/10.2144/btn-2020-0149 https://doi.org/10.25402/btn.13730758 |
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