Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...

R scripts written for differential analysis and regression analysis to investigate the molecular basis of Paralytic Shellfish Toxins load in the oyster Crassostrea gigas exposed to the toxigenic alga Alexandrium minutum. Differentially expressed genes were analyzed with R (version 3.2.3, Gentry et a...

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Bibliographic Details
Main Author: Mat, Audrey
Format: Dataset
Language:unknown
Published: SEANOE 2018
Subjects:
Crassostrea gigas
Alexandrium minutum
Paralytic Shellfish Toxins
R
Transcriptomic
Differential expression
Elastic-net regression
Script
Online Access:https://dx.doi.org/10.17882/52864
https://www.seanoe.org/data/00417/52864/
id ftdatacite:10.17882/52864
record_format openpolar
spelling ftdatacite:10.17882/52864 2023-11-05T03:41:21+01:00 Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ... Mat, Audrey 2018 https://dx.doi.org/10.17882/52864 https://www.seanoe.org/data/00417/52864/ unknown SEANOE https://dx.doi.org/10.1016/j.aquatox.2018.03.030 Creative Commons Attribution Non Commercial Share Alike 4.0 International https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode cc-by-nc-sa-4.0 Crassostrea gigas Alexandrium minutum Paralytic Shellfish Toxins R Transcriptomic Differential expression Elastic-net regression Script Dataset dataset 2018 ftdatacite https://doi.org/10.17882/5286410.1016/j.aquatox.2018.03.030 2023-10-09T10:18:59Z R scripts written for differential analysis and regression analysis to investigate the molecular basis of Paralytic Shellfish Toxins load in the oyster Crassostrea gigas exposed to the toxigenic alga Alexandrium minutum. Differentially expressed genes were analyzed with R (version 3.2.3, Gentry et al. (2004) Genome Biol 5:R80) using the packages DESeq2 (version 1.10.0; Love et al. (2014) Genome Biol 15:1-21) and edgeR (version 3.12.0, Robinson et al. (2010) Bioinformatics 26:139-140). Elastic-net regression was run with R using the package glmnet (version 2.0-2, Friedman et al. (2010) J Stat Softw 33:1-22). ... Dataset Crassostrea gigas DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Crassostrea gigas
Alexandrium minutum
Paralytic Shellfish Toxins
R
Transcriptomic
Differential expression
Elastic-net regression
Script
spellingShingle Crassostrea gigas
Alexandrium minutum
Paralytic Shellfish Toxins
R
Transcriptomic
Differential expression
Elastic-net regression
Script
Mat, Audrey
Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
topic_facet Crassostrea gigas
Alexandrium minutum
Paralytic Shellfish Toxins
R
Transcriptomic
Differential expression
Elastic-net regression
Script
description R scripts written for differential analysis and regression analysis to investigate the molecular basis of Paralytic Shellfish Toxins load in the oyster Crassostrea gigas exposed to the toxigenic alga Alexandrium minutum. Differentially expressed genes were analyzed with R (version 3.2.3, Gentry et al. (2004) Genome Biol 5:R80) using the packages DESeq2 (version 1.10.0; Love et al. (2014) Genome Biol 15:1-21) and edgeR (version 3.12.0, Robinson et al. (2010) Bioinformatics 26:139-140). Elastic-net regression was run with R using the package glmnet (version 2.0-2, Friedman et al. (2010) J Stat Softw 33:1-22). ...
format Dataset
author Mat, Audrey
author_facet Mat, Audrey
author_sort Mat, Audrey
title Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
title_short Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
title_full Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
title_fullStr Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
title_full_unstemmed Codes used to study the Crassostrea gigas oyster transcriptome response to Alexandrium exposure ...
title_sort codes used to study the crassostrea gigas oyster transcriptome response to alexandrium exposure ...
publisher SEANOE
publishDate 2018
url https://dx.doi.org/10.17882/52864
https://www.seanoe.org/data/00417/52864/
genre Crassostrea gigas
genre_facet Crassostrea gigas
op_relation https://dx.doi.org/10.1016/j.aquatox.2018.03.030
op_rights Creative Commons Attribution Non Commercial Share Alike 4.0 International
https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
cc-by-nc-sa-4.0
op_doi https://doi.org/10.17882/5286410.1016/j.aquatox.2018.03.030
_version_ 1781697691735031808

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