8. Ecological genomics of the Northern krill: Recombination rates and demographic history ...
This item contains archives of data and results used to assess recombination rates (iSMC), demographic history (PSMC, MSMC) and haplotype ages (GEVA) using coalescent methods. Population definitions Population definitions are the same as desribed in a different item: "at vs. me" = Atlantic...
| Main Authors: | , |
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| Format: | Dataset |
| Language: | unknown |
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SciLifeLab
2024
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| Online Access: | https://dx.doi.org/10.17044/scilifelab.22825277 https://figshare.scilifelab.se/articles/dataset/8_Ecological_genomics_of_the_Northern_krill_Recombination_rates_and_demographic_history/22825277 |
| Summary: | This item contains archives of data and results used to assess recombination rates (iSMC), demographic history (PSMC, MSMC) and haplotype ages (GEVA) using coalescent methods. Population definitions Population definitions are the same as desribed in a different item: "at vs. me" = Atlantic Ocean samples (n=67) vs. the Mediterranean (i.e. Barcelona) samples (n=7). "we vs. ea" = South-West North Atlantic Ocean (n=20) vs. North-East North Atlantic Ocean (n=47). In files using this contrast, sometimes the label "wa" is used instead of "we" for the South-West North Atlantic Ocean samples. Contents: psmc_dataset.psmcfa.gz , datasets for PSMC-analyses containing signatures of heterozygosity in the reference specimen that were converted from VCF into the fasta-like PSMCFA format. msmc_datasets.tar.gz , datasets for MSMC-analyses containing signatures of heterozygosity in the reference specimen that were converted from VCF into TSV. ismc_dataset.tar.gz , the VCF dataset and accessory files for iSMC-analyses used to ... |
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