1. Ecological genomics of the Northern krill: Genome assembly DNA sequences ...

• Main Authors: Wallberg, Andreas, Unneberg, Per
• Format: Dataset
• Language: unknown
• Published: SciLifeLab 2024
• Subjects: Biological adaptation; Evolutionary ecology; Genomics; Northern krill
• Online Access: https://dx.doi.org/10.17044/scilifelab.22785269.v1; https://figshare.scilifelab.se/articles/dataset/1_Ecological_genomics_of_the_Northern_krill_Genome_assembly_DNA_sequences/22785269/1

northern_krill.genome_assembly.tar.gz , the major gzipped tar archive that contains seven DNA sequence files in FASTA format. These files represent the finished genome assembly of the Northern krill, produced using the "K20" reference specimen. non_reference_preliminary_mitochondrial_sequence.tar.gz , a minor file with resources used to assemble a preliminary mitochondrial sequence from a non-reference specimen ("K4"). README.genecovr_instructions.txt , instructions in a text file for how to use genecovr and GMAP to evaluate the quality of the resulting genome assembly using RNA transcript sequences. 1.m_norvegica.main_w_mito.fasta , main genome assembly including mitochondrial chromosome, 216568 sequences, 19.7 Gb. 2.m_norvegica.short.fasta , very short assembly fragments below 200 bp, 228 sequences, 27 kb. 3.m_norvegica.artefacts.fasta , sequences flagged as artefacts by Purge_Haplotigs due to very low or high mapping depths, 49868 sequences, 556 Mb. 4.m_norvegica.haplotigs.fasta , sequences flagged as ...