Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...

We examined gene expression responses of >2-year coral transplant experiment to ambient and low pH common garden sites of three species of reef-building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities (Symbiodiniaceae) originating from...

Full description

Bibliographic Details
Main Authors: Radice, Veronica Z, Martinez, Ana, Paytan, Adina, Potts, Donald C, Barshis, Daniel J
Format: Dataset
Language:unknown
Published: PANGAEA 2024
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.966769
https://doi.pangaea.de/10.1594/PANGAEA.966769
id ftdatacite:10.1594/pangaea.966769
record_format openpolar
spelling ftdatacite:10.1594/pangaea.966769 2024-06-09T07:48:18+00:00 Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ... Radice, Veronica Z Martinez, Ana Paytan, Adina Potts, Donald C Barshis, Daniel J 2024 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.966769 https://doi.pangaea.de/10.1594/PANGAEA.966769 unknown PANGAEA https://CRAN.R-project.org/package=seacarb https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA865460 https://dx.doi.org/10.1111/mec.17186 https://dx.doi.org/10.1594/pangaea.913183 https://CRAN.R-project.org/package=seacarb https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA865460 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Benthic animals Benthos Biomass/Abundance/Elemental composition Calcification/Dissolution Cnidaria Coast and continental shelf Field experiment Gene expression incl. proteomics Growth/Morphology North Atlantic Porites astreoides Porites porites Siderastrea siderea Single species Tropical Event label Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Site Replicates Linear extension Linear extension, standard error Density Density, standard error Symbiont cell density Symbiont cell density, standard error Chlorophyll a Chlorophyll a, standard error Chlorophyll a per cell Proteins Proteins, standard error Alkalinity, total Alkalinity, total, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error pH pH, standard error Aragonite saturation state Aragonite saturation state, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Dataset dataset 2024 ftdatacite https://doi.org/10.1594/pangaea.96676910.1111/mec.1718610.1594/pangaea.913183 2024-05-13T12:44:21Z We examined gene expression responses of >2-year coral transplant experiment to ambient and low pH common garden sites of three species of reef-building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities (Symbiodiniaceae) originating from low pH (Ojo) and ambient pH native origins (Lagoon or Reef). ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06. ... Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Animalia
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Cnidaria
Coast and continental shelf
Field experiment
Gene expression incl. proteomics
Growth/Morphology
North Atlantic
Porites astreoides
Porites porites
Siderastrea siderea
Single species
Tropical
Event label
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Site
Replicates
Linear extension
Linear extension, standard error
Density
Density, standard error
Symbiont cell density
Symbiont cell density, standard error
Chlorophyll a
Chlorophyll a, standard error
Chlorophyll a per cell
Proteins
Proteins, standard error
Alkalinity, total
Alkalinity, total, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
pH
pH, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
spellingShingle Animalia
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Cnidaria
Coast and continental shelf
Field experiment
Gene expression incl. proteomics
Growth/Morphology
North Atlantic
Porites astreoides
Porites porites
Siderastrea siderea
Single species
Tropical
Event label
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Site
Replicates
Linear extension
Linear extension, standard error
Density
Density, standard error
Symbiont cell density
Symbiont cell density, standard error
Chlorophyll a
Chlorophyll a, standard error
Chlorophyll a per cell
Proteins
Proteins, standard error
Alkalinity, total
Alkalinity, total, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
pH
pH, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Radice, Veronica Z
Martinez, Ana
Paytan, Adina
Potts, Donald C
Barshis, Daniel J
Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
topic_facet Animalia
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Calcification/Dissolution
Cnidaria
Coast and continental shelf
Field experiment
Gene expression incl. proteomics
Growth/Morphology
North Atlantic
Porites astreoides
Porites porites
Siderastrea siderea
Single species
Tropical
Event label
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Site
Replicates
Linear extension
Linear extension, standard error
Density
Density, standard error
Symbiont cell density
Symbiont cell density, standard error
Chlorophyll a
Chlorophyll a, standard error
Chlorophyll a per cell
Proteins
Proteins, standard error
Alkalinity, total
Alkalinity, total, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
pH
pH, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
description We examined gene expression responses of >2-year coral transplant experiment to ambient and low pH common garden sites of three species of reef-building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities (Symbiodiniaceae) originating from low pH (Ojo) and ambient pH native origins (Lagoon or Reef). ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06. ...
format Dataset
author Radice, Veronica Z
Martinez, Ana
Paytan, Adina
Potts, Donald C
Barshis, Daniel J
author_facet Radice, Veronica Z
Martinez, Ana
Paytan, Adina
Potts, Donald C
Barshis, Daniel J
author_sort Radice, Veronica Z
title Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
title_short Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
title_full Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
title_fullStr Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
title_full_unstemmed Seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
title_sort seawater carbonate chemistry and physiological metrics and gene expression responses of transplants of three species of reef-building corals ...
publisher PANGAEA
publishDate 2024
url https://dx.doi.org/10.1594/pangaea.966769
https://doi.pangaea.de/10.1594/PANGAEA.966769
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation https://CRAN.R-project.org/package=seacarb
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA865460
https://dx.doi.org/10.1111/mec.17186
https://dx.doi.org/10.1594/pangaea.913183
https://CRAN.R-project.org/package=seacarb
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA865460
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.96676910.1111/mec.1718610.1594/pangaea.913183
_version_ 1801379973211095040