Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...

Ocean acidification (OA) has important effects on the intrinsic phenotypic characteristics of many marine organisms. Concomitantly, OA can alter the extended phenotypes of these organisms by perturbing the structure and function of their associated microbiomes. It is unclear, however, the extent to...

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Main Authors: Dang, Xin, Huang, Qi, He, Yuan-Qiu, Gaitán-Espitia, Juan Diego, Zhang, Tong, Thiyagarajan, Vengatesen
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.958552
https://doi.pangaea.de/10.1594/PANGAEA.958552
id ftdatacite:10.1594/pangaea.958552
record_format openpolar
spelling ftdatacite:10.1594/pangaea.958552 2024-04-28T08:34:51+00:00 Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ... Dang, Xin Huang, Qi He, Yuan-Qiu Gaitán-Espitia, Juan Diego Zhang, Tong Thiyagarajan, Vengatesen 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.958552 https://doi.pangaea.de/10.1594/PANGAEA.958552 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1016/j.aquatox.2023.106413 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Benthic animals Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea angulata Crassostrea hongkongensis Immunology/Self-protection Laboratory experiment Laboratory strains Mollusca Mortality/Survival Not applicable Other studied parameter or process Single species Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Figure Treatment Time in days Survival Apoptosis cells Phagocytosis rate Strain Bacteria clearance in hemocytes Abundance Abundance, standard deviation Replicates Glycogen Triglycerides Albumin pH pH, standard deviation Temperature, water Temperature, water, standard deviation Salinity Salinity, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Carbonate ion Carbonate ion, standard deviation Calcite saturation state Calcite saturation state, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95855210.1016/j.aquatox.2023.106413 2024-04-02T11:36:31Z Ocean acidification (OA) has important effects on the intrinsic phenotypic characteristics of many marine organisms. Concomitantly, OA can alter the extended phenotypes of these organisms by perturbing the structure and function of their associated microbiomes. It is unclear, however, the extent to which interactions between these levels of phenotypic change can modulate the capacity for resilience to OA. Here, we explored this theoretical framework assessing the influence of OA on intrinsic (immunological responses and energy reserve) and extrinsic (gut microbiome) phenotypic characteristics and the survival of important calcifiers, the edible oysters Crassostrea angulata and C. hongkongensis. After one-month exposure to experimental OA (pH 7.4) and control (pH 8.0) conditions, we found species-specific responses characterised by elevated stress (hemocyte apoptosis) and decreased survival in the coastal species (C. angulata) compared with the estuarine species (C. hongkongensis). Phagocytosis of hemocytes ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-05-08. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Animalia
Benthic animals
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea angulata
Crassostrea hongkongensis
Immunology/Self-protection
Laboratory experiment
Laboratory strains
Mollusca
Mortality/Survival
Not applicable
Other studied parameter or process
Single species
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Figure
Treatment
Time in days
Survival
Apoptosis cells
Phagocytosis rate
Strain
Bacteria clearance in hemocytes
Abundance
Abundance, standard deviation
Replicates
Glycogen
Triglycerides
Albumin
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
spellingShingle Animalia
Benthic animals
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea angulata
Crassostrea hongkongensis
Immunology/Self-protection
Laboratory experiment
Laboratory strains
Mollusca
Mortality/Survival
Not applicable
Other studied parameter or process
Single species
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Figure
Treatment
Time in days
Survival
Apoptosis cells
Phagocytosis rate
Strain
Bacteria clearance in hemocytes
Abundance
Abundance, standard deviation
Replicates
Glycogen
Triglycerides
Albumin
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Dang, Xin
Huang, Qi
He, Yuan-Qiu
Gaitán-Espitia, Juan Diego
Zhang, Tong
Thiyagarajan, Vengatesen
Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
topic_facet Animalia
Benthic animals
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea angulata
Crassostrea hongkongensis
Immunology/Self-protection
Laboratory experiment
Laboratory strains
Mollusca
Mortality/Survival
Not applicable
Other studied parameter or process
Single species
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Figure
Treatment
Time in days
Survival
Apoptosis cells
Phagocytosis rate
Strain
Bacteria clearance in hemocytes
Abundance
Abundance, standard deviation
Replicates
Glycogen
Triglycerides
Albumin
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
description Ocean acidification (OA) has important effects on the intrinsic phenotypic characteristics of many marine organisms. Concomitantly, OA can alter the extended phenotypes of these organisms by perturbing the structure and function of their associated microbiomes. It is unclear, however, the extent to which interactions between these levels of phenotypic change can modulate the capacity for resilience to OA. Here, we explored this theoretical framework assessing the influence of OA on intrinsic (immunological responses and energy reserve) and extrinsic (gut microbiome) phenotypic characteristics and the survival of important calcifiers, the edible oysters Crassostrea angulata and C. hongkongensis. After one-month exposure to experimental OA (pH 7.4) and control (pH 8.0) conditions, we found species-specific responses characterised by elevated stress (hemocyte apoptosis) and decreased survival in the coastal species (C. angulata) compared with the estuarine species (C. hongkongensis). Phagocytosis of hemocytes ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-05-08. ...
format Dataset
author Dang, Xin
Huang, Qi
He, Yuan-Qiu
Gaitán-Espitia, Juan Diego
Zhang, Tong
Thiyagarajan, Vengatesen
author_facet Dang, Xin
Huang, Qi
He, Yuan-Qiu
Gaitán-Espitia, Juan Diego
Zhang, Tong
Thiyagarajan, Vengatesen
author_sort Dang, Xin
title Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
title_short Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
title_full Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
title_fullStr Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
title_full_unstemmed Seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters Crassostrea angulata and C. hongkongensis ...
title_sort seawater carbonate chemistry and the intrinsic and extrinsic phenotypic characteristics and the survival of important calcifiers, the edib oysters crassostrea angulata and c. hongkongensis ...
publisher PANGAEA
publishDate 2023
url https://dx.doi.org/10.1594/pangaea.958552
https://doi.pangaea.de/10.1594/PANGAEA.958552
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1016/j.aquatox.2023.106413
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.95855210.1016/j.aquatox.2023.106413
_version_ 1797591380778811392