Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...

Biomineralization is one of the key biochemical processes in calcifying bivalve species such as oysters that is affected by ocean acidification (OA). Larval life stages of oysters are made of aragonite crystals whereas the adults are made of calcite and/or aragonite. Though both calcite and aragonit...

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Main Authors: Chandra Rajan, Kanmani, Li, Yang, Dang, Xin, Lim, Yong Kian, Suzuki, Michio, Lee, Seung Woo, Thiyagarajan, Vengatesen
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.957918
https://doi.pangaea.de/10.1594/PANGAEA.957918
id ftdatacite:10.1594/pangaea.957918
record_format openpolar
spelling ftdatacite:10.1594/pangaea.957918 2024-04-28T08:34:43+00:00 Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ... Chandra Rajan, Kanmani Li, Yang Dang, Xin Lim, Yong Kian Suzuki, Michio Lee, Seung Woo Thiyagarajan, Vengatesen 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.957918 https://doi.pangaea.de/10.1594/PANGAEA.957918 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1098/rspb.2022.1216 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Benthic animals Benthos Bottles or small containers/Aquaria <20 L Calcification/Dissolution Coast and continental shelf Crassostrea hongkongensis Laboratory experiment Mollusca North Pacific Pelagos Single species Tropical Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Stage Percentage pH pH, standard deviation Temperature, water Temperature, water, standard deviation Salinity Salinity, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Carbonate ion Carbonate ion, standard deviation Calcite saturation state Calcite saturation state, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95791810.1098/rspb.2022.1216 2024-04-02T11:36:31Z Biomineralization is one of the key biochemical processes in calcifying bivalve species such as oysters that is affected by ocean acidification (OA). Larval life stages of oysters are made of aragonite crystals whereas the adults are made of calcite and/or aragonite. Though both calcite and aragonite are crystal polymorphs of calcium carbonate, they have different mechanical properties and hence it is important to study the micro and nano structure of different life stages of oyster shells under OA to understand the mechanisms by which OA affects biomineralization ontogeny. Here, we have studied the larval and juvenile life stages of an economically and ecologically important estuarine oyster species, Crassostrea hongkongensis, under OA with focus over shell fabrication under OA (pHNBS 7.4). We also look at the effect of parental exposure to OA on larvae and juvenile microstructure. The micro and nanostructure characterization reveals directional fabrication of oyster shells, with more organized structure as ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-20. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Animalia
Benthic animals
Benthos
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Coast and continental shelf
Crassostrea hongkongensis
Laboratory experiment
Mollusca
North Pacific
Pelagos
Single species
Tropical
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Stage
Percentage
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Animalia
Benthic animals
Benthos
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Coast and continental shelf
Crassostrea hongkongensis
Laboratory experiment
Mollusca
North Pacific
Pelagos
Single species
Tropical
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Stage
Percentage
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Chandra Rajan, Kanmani
Li, Yang
Dang, Xin
Lim, Yong Kian
Suzuki, Michio
Lee, Seung Woo
Thiyagarajan, Vengatesen
Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
topic_facet Animalia
Benthic animals
Benthos
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Coast and continental shelf
Crassostrea hongkongensis
Laboratory experiment
Mollusca
North Pacific
Pelagos
Single species
Tropical
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Stage
Percentage
pH
pH, standard deviation
Temperature, water
Temperature, water, standard deviation
Salinity
Salinity, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Biomineralization is one of the key biochemical processes in calcifying bivalve species such as oysters that is affected by ocean acidification (OA). Larval life stages of oysters are made of aragonite crystals whereas the adults are made of calcite and/or aragonite. Though both calcite and aragonite are crystal polymorphs of calcium carbonate, they have different mechanical properties and hence it is important to study the micro and nano structure of different life stages of oyster shells under OA to understand the mechanisms by which OA affects biomineralization ontogeny. Here, we have studied the larval and juvenile life stages of an economically and ecologically important estuarine oyster species, Crassostrea hongkongensis, under OA with focus over shell fabrication under OA (pHNBS 7.4). We also look at the effect of parental exposure to OA on larvae and juvenile microstructure. The micro and nanostructure characterization reveals directional fabrication of oyster shells, with more organized structure as ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-20. ...
format Dataset
author Chandra Rajan, Kanmani
Li, Yang
Dang, Xin
Lim, Yong Kian
Suzuki, Michio
Lee, Seung Woo
Thiyagarajan, Vengatesen
author_facet Chandra Rajan, Kanmani
Li, Yang
Dang, Xin
Lim, Yong Kian
Suzuki, Michio
Lee, Seung Woo
Thiyagarajan, Vengatesen
author_sort Chandra Rajan, Kanmani
title Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
title_short Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
title_full Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
title_fullStr Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
title_full_unstemmed Seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
title_sort seawater carbonate chemistry and dissolution of larval and juvenile oyster shells ...
publisher PANGAEA
publishDate 2023
url https://dx.doi.org/10.1594/pangaea.957918
https://doi.pangaea.de/10.1594/PANGAEA.957918
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1098/rspb.2022.1216
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.95791810.1098/rspb.2022.1216
_version_ 1797591298039873536