Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea vi...
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Online Access: | https://dx.doi.org/10.1594/pangaea.957780 https://doi.pangaea.de/10.1594/PANGAEA.957780 |
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ftdatacite:10.1594/pangaea.957780 2024-04-28T08:31:41+00:00 Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.957780 https://doi.pangaea.de/10.1594/PANGAEA.957780 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3390/genes13091529 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Growth/Morphology Laboratory experiment Mollusca Mortality/Survival North Atlantic Pelagos Single species Temperate Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Identification Length Mortality Salinity Temperature, water pH pH, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Experiment Potentiometric Calculated using seacarb Coulometric titration Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95778010.3390/genes13091529 2024-04-02T11:36:31Z Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-23. ... Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Animalia Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Growth/Morphology Laboratory experiment Mollusca Mortality/Survival North Atlantic Pelagos Single species Temperate Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Identification Length Mortality Salinity Temperature, water pH pH, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Experiment Potentiometric Calculated using seacarb Coulometric titration Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Growth/Morphology Laboratory experiment Mollusca Mortality/Survival North Atlantic Pelagos Single species Temperate Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Identification Length Mortality Salinity Temperature, water pH pH, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Experiment Potentiometric Calculated using seacarb Coulometric titration Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
topic_facet |
Animalia Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Growth/Morphology Laboratory experiment Mollusca Mortality/Survival North Atlantic Pelagos Single species Temperate Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Identification Length Mortality Salinity Temperature, water pH pH, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Experiment Potentiometric Calculated using seacarb Coulometric titration Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-23. ... |
format |
Dataset |
author |
Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem |
author_facet |
Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem |
author_sort |
Barbosa, Michelle |
title |
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
title_short |
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
title_full |
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
title_fullStr |
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
title_full_unstemmed |
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... |
title_sort |
seawater carbonate chemistry and phenotypic plasticity in crassostrea virginica larvae ... |
publisher |
PANGAEA |
publishDate |
2023 |
url |
https://dx.doi.org/10.1594/pangaea.957780 https://doi.pangaea.de/10.1594/PANGAEA.957780 |
genre |
North Atlantic Ocean acidification |
genre_facet |
North Atlantic Ocean acidification |
op_relation |
https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3390/genes13091529 https://cran.r-project.org/web/packages/seacarb/index.html |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.1594/pangaea.95778010.3390/genes13091529 |
_version_ |
1797589119524667392 |