Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...

Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea vi...

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Main Authors: Barbosa, Michelle, Schwaner, Caroline, Espinosa, Emmanuelle Pales, Allam, Bassem
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.957780
https://doi.pangaea.de/10.1594/PANGAEA.957780
id ftdatacite:10.1594/pangaea.957780
record_format openpolar
spelling ftdatacite:10.1594/pangaea.957780 2024-04-28T08:31:41+00:00 Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ... Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.957780 https://doi.pangaea.de/10.1594/PANGAEA.957780 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3390/genes13091529 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Growth/Morphology Laboratory experiment Mollusca Mortality/Survival North Atlantic Pelagos Single species Temperate Zooplankton Type of study Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Identification Length Mortality Salinity Temperature, water pH pH, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Experiment Potentiometric Calculated using seacarb Coulometric titration Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95778010.3390/genes13091529 2024-04-02T11:36:31Z Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-23. ... Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Animalia
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Growth/Morphology
Laboratory experiment
Mollusca
Mortality/Survival
North Atlantic
Pelagos
Single species
Temperate
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Identification
Length
Mortality
Salinity
Temperature, water
pH
pH, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Experiment
Potentiometric
Calculated using seacarb
Coulometric titration
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Animalia
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Growth/Morphology
Laboratory experiment
Mollusca
Mortality/Survival
North Atlantic
Pelagos
Single species
Temperate
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Identification
Length
Mortality
Salinity
Temperature, water
pH
pH, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Experiment
Potentiometric
Calculated using seacarb
Coulometric titration
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
topic_facet Animalia
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Growth/Morphology
Laboratory experiment
Mollusca
Mortality/Survival
North Atlantic
Pelagos
Single species
Temperate
Zooplankton
Type of study
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Identification
Length
Mortality
Salinity
Temperature, water
pH
pH, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Calcite saturation state, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Experiment
Potentiometric
Calculated using seacarb
Coulometric titration
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-23. ...
format Dataset
author Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
author_facet Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
author_sort Barbosa, Michelle
title Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
title_short Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
title_full Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
title_fullStr Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
title_full_unstemmed Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae ...
title_sort seawater carbonate chemistry and phenotypic plasticity in crassostrea virginica larvae ...
publisher PANGAEA
publishDate 2023
url https://dx.doi.org/10.1594/pangaea.957780
https://doi.pangaea.de/10.1594/PANGAEA.957780
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.3390/genes13091529
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.95778010.3390/genes13091529
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