Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments...
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Online Access: | https://dx.doi.org/10.1594/pangaea.957342 https://doi.pangaea.de/10.1594/PANGAEA.957342 |
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ftdatacite:10.1594/pangaea.957342 2024-04-28T08:34:51+00:00 Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... Zhang, Futing Wen, Zuozhu Wang, Shanlin Tang, Weiyi Luo, Yawei Kranz, Sven A Hong, Haizheng Shi, Dalin 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.957342 https://doi.pangaea.de/10.1594/PANGAEA.957342 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1038/s41467-022-34586-x https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cyanobacteria Entire community Gene expression incl. proteomics Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients Micro-nutrients North Pacific Not applicable Open ocean Other metabolic rates Other studied parameter or process Pelagos Phytoplankton Primary production/Photosynthesis Single species Trichodesmium erythraeum Tropical Type Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Replicate Photosynthetic carbon fixation rate per cell Nitrogen fixation rate, per cell Particulate organic carbon, per cell Particulate organic nitrogen per cell Particulate organic phosphorus per cell Polyphosphate as femto-equivalents of the standard per cell Reduced nicotinamide adenine dinucleotide Nicotinamide adenine dinucleotide phosphate Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio Gene expression Adenosine 5-Triphosphate, per cell Glutamate per cell Carbon, organic, particulate/Phosphorus, organic, particulate ratio Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio Photosynthetic carbon fixation rate Nitrogen fixation rate Lipids per cell Ribonucleic acid per cell Cell, length Cell, length, standard deviation Cell, width Cell, width, standard deviation dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95734210.1038/s41467-022-34586-x 2024-04-02T12:04:04Z Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments to show that acidification enhanced phosphorus demands and decreased phosphorus-specific nitrogen fixation rates in Trichodesmium. The increased phosphorus requirements were attributed primarily to elevated cellular polyphosphate contents, likely for maintaining cytosolic pH homeostasis in response to acidification. Alongside the accumulation of polyphosphate, decreased NADP(H):NAD(H) ratios and impaired chlorophyll synthesis and energy production were observed under acidified conditions. Consequently, the negative effects of acidification were amplified compared to those demonstrated previously under phosphorus sufficiency. Estimating the potential implications of this finding, using outputs from the Community ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-07. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cyanobacteria Entire community Gene expression incl. proteomics Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients Micro-nutrients North Pacific Not applicable Open ocean Other metabolic rates Other studied parameter or process Pelagos Phytoplankton Primary production/Photosynthesis Single species Trichodesmium erythraeum Tropical Type Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Replicate Photosynthetic carbon fixation rate per cell Nitrogen fixation rate, per cell Particulate organic carbon, per cell Particulate organic nitrogen per cell Particulate organic phosphorus per cell Polyphosphate as femto-equivalents of the standard per cell Reduced nicotinamide adenine dinucleotide Nicotinamide adenine dinucleotide phosphate Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio Gene expression Adenosine 5-Triphosphate, per cell Glutamate per cell Carbon, organic, particulate/Phosphorus, organic, particulate ratio Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio Photosynthetic carbon fixation rate Nitrogen fixation rate Lipids per cell Ribonucleic acid per cell Cell, length Cell, length, standard deviation Cell, width Cell, width, standard deviation |
spellingShingle |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cyanobacteria Entire community Gene expression incl. proteomics Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients Micro-nutrients North Pacific Not applicable Open ocean Other metabolic rates Other studied parameter or process Pelagos Phytoplankton Primary production/Photosynthesis Single species Trichodesmium erythraeum Tropical Type Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Replicate Photosynthetic carbon fixation rate per cell Nitrogen fixation rate, per cell Particulate organic carbon, per cell Particulate organic nitrogen per cell Particulate organic phosphorus per cell Polyphosphate as femto-equivalents of the standard per cell Reduced nicotinamide adenine dinucleotide Nicotinamide adenine dinucleotide phosphate Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio Gene expression Adenosine 5-Triphosphate, per cell Glutamate per cell Carbon, organic, particulate/Phosphorus, organic, particulate ratio Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio Photosynthetic carbon fixation rate Nitrogen fixation rate Lipids per cell Ribonucleic acid per cell Cell, length Cell, length, standard deviation Cell, width Cell, width, standard deviation Zhang, Futing Wen, Zuozhu Wang, Shanlin Tang, Weiyi Luo, Yawei Kranz, Sven A Hong, Haizheng Shi, Dalin Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
topic_facet |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cyanobacteria Entire community Gene expression incl. proteomics Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients Micro-nutrients North Pacific Not applicable Open ocean Other metabolic rates Other studied parameter or process Pelagos Phytoplankton Primary production/Photosynthesis Single species Trichodesmium erythraeum Tropical Type Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Replicate Photosynthetic carbon fixation rate per cell Nitrogen fixation rate, per cell Particulate organic carbon, per cell Particulate organic nitrogen per cell Particulate organic phosphorus per cell Polyphosphate as femto-equivalents of the standard per cell Reduced nicotinamide adenine dinucleotide Nicotinamide adenine dinucleotide phosphate Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio Gene expression Adenosine 5-Triphosphate, per cell Glutamate per cell Carbon, organic, particulate/Phosphorus, organic, particulate ratio Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio Photosynthetic carbon fixation rate Nitrogen fixation rate Lipids per cell Ribonucleic acid per cell Cell, length Cell, length, standard deviation Cell, width Cell, width, standard deviation |
description |
Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments to show that acidification enhanced phosphorus demands and decreased phosphorus-specific nitrogen fixation rates in Trichodesmium. The increased phosphorus requirements were attributed primarily to elevated cellular polyphosphate contents, likely for maintaining cytosolic pH homeostasis in response to acidification. Alongside the accumulation of polyphosphate, decreased NADP(H):NAD(H) ratios and impaired chlorophyll synthesis and energy production were observed under acidified conditions. Consequently, the negative effects of acidification were amplified compared to those demonstrated previously under phosphorus sufficiency. Estimating the potential implications of this finding, using outputs from the Community ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-07. ... |
format |
Dataset |
author |
Zhang, Futing Wen, Zuozhu Wang, Shanlin Tang, Weiyi Luo, Yawei Kranz, Sven A Hong, Haizheng Shi, Dalin |
author_facet |
Zhang, Futing Wen, Zuozhu Wang, Shanlin Tang, Weiyi Luo, Yawei Kranz, Sven A Hong, Haizheng Shi, Dalin |
author_sort |
Zhang, Futing |
title |
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
title_short |
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
title_full |
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
title_fullStr |
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
title_full_unstemmed |
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... |
title_sort |
seawater carbonate chemistry and nitrogen fixation by phosphorus-limited trichodesmium ... |
publisher |
PANGAEA |
publishDate |
2023 |
url |
https://dx.doi.org/10.1594/pangaea.957342 https://doi.pangaea.de/10.1594/PANGAEA.957342 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1038/s41467-022-34586-x https://cran.r-project.org/web/packages/seacarb/index.html |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.1594/pangaea.95734210.1038/s41467-022-34586-x |
_version_ |
1797591388847603712 |