Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...

Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments...

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Main Authors: Zhang, Futing, Wen, Zuozhu, Wang, Shanlin, Tang, Weiyi, Luo, Yawei, Kranz, Sven A, Hong, Haizheng, Shi, Dalin
Format: Dataset
Language:English
Published: PANGAEA 2023
Subjects:
Online Access:https://dx.doi.org/10.1594/pangaea.957342
https://doi.pangaea.de/10.1594/PANGAEA.957342
id ftdatacite:10.1594/pangaea.957342
record_format openpolar
spelling ftdatacite:10.1594/pangaea.957342 2024-04-28T08:34:51+00:00 Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ... Zhang, Futing Wen, Zuozhu Wang, Shanlin Tang, Weiyi Luo, Yawei Kranz, Sven A Hong, Haizheng Shi, Dalin 2023 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.957342 https://doi.pangaea.de/10.1594/PANGAEA.957342 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1038/s41467-022-34586-x https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cyanobacteria Entire community Gene expression incl. proteomics Growth/Morphology Laboratory experiment Laboratory strains Macro-nutrients Micro-nutrients North Pacific Not applicable Open ocean Other metabolic rates Other studied parameter or process Pelagos Phytoplankton Primary production/Photosynthesis Single species Trichodesmium erythraeum Tropical Type Species, unique identification Species, unique identification URI Species, unique identification Semantic URI Treatment Replicate Photosynthetic carbon fixation rate per cell Nitrogen fixation rate, per cell Particulate organic carbon, per cell Particulate organic nitrogen per cell Particulate organic phosphorus per cell Polyphosphate as femto-equivalents of the standard per cell Reduced nicotinamide adenine dinucleotide Nicotinamide adenine dinucleotide phosphate Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio Gene expression Adenosine 5-Triphosphate, per cell Glutamate per cell Carbon, organic, particulate/Phosphorus, organic, particulate ratio Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio Photosynthetic carbon fixation rate Nitrogen fixation rate Lipids per cell Ribonucleic acid per cell Cell, length Cell, length, standard deviation Cell, width Cell, width, standard deviation dataset Dataset 2023 ftdatacite https://doi.org/10.1594/pangaea.95734210.1038/s41467-022-34586-x 2024-04-02T12:04:04Z Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments to show that acidification enhanced phosphorus demands and decreased phosphorus-specific nitrogen fixation rates in Trichodesmium. The increased phosphorus requirements were attributed primarily to elevated cellular polyphosphate contents, likely for maintaining cytosolic pH homeostasis in response to acidification. Alongside the accumulation of polyphosphate, decreased NADP(H):NAD(H) ratios and impaired chlorophyll synthesis and energy production were observed under acidified conditions. Consequently, the negative effects of acidification were amplified compared to those demonstrated previously under phosphorus sufficiency. Estimating the potential implications of this finding, using outputs from the Community ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-07. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cyanobacteria
Entire community
Gene expression incl. proteomics
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
Micro-nutrients
North Pacific
Not applicable
Open ocean
Other metabolic rates
Other studied parameter or process
Pelagos
Phytoplankton
Primary production/Photosynthesis
Single species
Trichodesmium erythraeum
Tropical
Type
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Replicate
Photosynthetic carbon fixation rate per cell
Nitrogen fixation rate, per cell
Particulate organic carbon, per cell
Particulate organic nitrogen per cell
Particulate organic phosphorus per cell
Polyphosphate as femto-equivalents of the standard per cell
Reduced nicotinamide adenine dinucleotide
Nicotinamide adenine dinucleotide phosphate
Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio
Gene expression
Adenosine 5-Triphosphate, per cell
Glutamate per cell
Carbon, organic, particulate/Phosphorus, organic, particulate ratio
Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio
Photosynthetic carbon fixation rate
Nitrogen fixation rate
Lipids per cell
Ribonucleic acid per cell
Cell, length
Cell, length, standard deviation
Cell, width
Cell, width, standard deviation
spellingShingle Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cyanobacteria
Entire community
Gene expression incl. proteomics
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
Micro-nutrients
North Pacific
Not applicable
Open ocean
Other metabolic rates
Other studied parameter or process
Pelagos
Phytoplankton
Primary production/Photosynthesis
Single species
Trichodesmium erythraeum
Tropical
Type
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Replicate
Photosynthetic carbon fixation rate per cell
Nitrogen fixation rate, per cell
Particulate organic carbon, per cell
Particulate organic nitrogen per cell
Particulate organic phosphorus per cell
Polyphosphate as femto-equivalents of the standard per cell
Reduced nicotinamide adenine dinucleotide
Nicotinamide adenine dinucleotide phosphate
Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio
Gene expression
Adenosine 5-Triphosphate, per cell
Glutamate per cell
Carbon, organic, particulate/Phosphorus, organic, particulate ratio
Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio
Photosynthetic carbon fixation rate
Nitrogen fixation rate
Lipids per cell
Ribonucleic acid per cell
Cell, length
Cell, length, standard deviation
Cell, width
Cell, width, standard deviation
Zhang, Futing
Wen, Zuozhu
Wang, Shanlin
Tang, Weiyi
Luo, Yawei
Kranz, Sven A
Hong, Haizheng
Shi, Dalin
Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
topic_facet Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cyanobacteria
Entire community
Gene expression incl. proteomics
Growth/Morphology
Laboratory experiment
Laboratory strains
Macro-nutrients
Micro-nutrients
North Pacific
Not applicable
Open ocean
Other metabolic rates
Other studied parameter or process
Pelagos
Phytoplankton
Primary production/Photosynthesis
Single species
Trichodesmium erythraeum
Tropical
Type
Species, unique identification
Species, unique identification URI
Species, unique identification Semantic URI
Treatment
Replicate
Photosynthetic carbon fixation rate per cell
Nitrogen fixation rate, per cell
Particulate organic carbon, per cell
Particulate organic nitrogen per cell
Particulate organic phosphorus per cell
Polyphosphate as femto-equivalents of the standard per cell
Reduced nicotinamide adenine dinucleotide
Nicotinamide adenine dinucleotide phosphate
Nicotinamide adenine dinucleotide phosphate/Reduced nicotinamide adenine dinucleotide ratio
Gene expression
Adenosine 5-Triphosphate, per cell
Glutamate per cell
Carbon, organic, particulate/Phosphorus, organic, particulate ratio
Nitrogen, organic, particulate/Phosphorus, organic, particulate ratio
Photosynthetic carbon fixation rate
Nitrogen fixation rate
Lipids per cell
Ribonucleic acid per cell
Cell, length
Cell, length, standard deviation
Cell, width
Cell, width, standard deviation
description Growth of the prominent nitrogen-fixing cyanobacterium Trichodesmium is often limited by phosphorus availability in the ocean. How nitrogen fixation by phosphorus-limited Trichodesmium may respond to ocean acidification remains poorly understood. Here, we use phosphate-limited chemostat experiments to show that acidification enhanced phosphorus demands and decreased phosphorus-specific nitrogen fixation rates in Trichodesmium. The increased phosphorus requirements were attributed primarily to elevated cellular polyphosphate contents, likely for maintaining cytosolic pH homeostasis in response to acidification. Alongside the accumulation of polyphosphate, decreased NADP(H):NAD(H) ratios and impaired chlorophyll synthesis and energy production were observed under acidified conditions. Consequently, the negative effects of acidification were amplified compared to those demonstrated previously under phosphorus sufficiency. Estimating the potential implications of this finding, using outputs from the Community ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-04-07. ...
format Dataset
author Zhang, Futing
Wen, Zuozhu
Wang, Shanlin
Tang, Weiyi
Luo, Yawei
Kranz, Sven A
Hong, Haizheng
Shi, Dalin
author_facet Zhang, Futing
Wen, Zuozhu
Wang, Shanlin
Tang, Weiyi
Luo, Yawei
Kranz, Sven A
Hong, Haizheng
Shi, Dalin
author_sort Zhang, Futing
title Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
title_short Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
title_full Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
title_fullStr Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
title_full_unstemmed Seawater carbonate chemistry and nitrogen fixation by phosphorus-limited Trichodesmium ...
title_sort seawater carbonate chemistry and nitrogen fixation by phosphorus-limited trichodesmium ...
publisher PANGAEA
publishDate 2023
url https://dx.doi.org/10.1594/pangaea.957342
https://doi.pangaea.de/10.1594/PANGAEA.957342
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1038/s41467-022-34586-x
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.95734210.1038/s41467-022-34586-x
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