Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ...
Sublethal exposure to environmental challenges may enhance ability to cope with chronic or repeated change, a process known as priming. In a previous study, pre-exposure to seawater enriched with pCO2 improved growth and reduced antioxidant capacity of juvenile Pacific geoduck Panopea generosa clams...
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Online Access: | https://dx.doi.org/10.1594/pangaea.952281 https://doi.pangaea.de/10.1594/PANGAEA.952281 |
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ftdatacite:10.1594/pangaea.952281 2024-04-28T08:34:51+00:00 Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... Gurr, Samuel J Trigg, Shelly A Vadopalas, Brent Roberts, Steven B Putnam, H M 2022 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.952281 https://doi.pangaea.de/10.1594/PANGAEA.952281 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1111/mec.16644 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.5281/zenodo.6908630 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Animalia Benthic animals Benthos Bottles or small containers/Aquaria <20 L Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Mollusca North Pacific Panopea generosa Single species Temperate Type Species, unique identification Experiment Treatment Replicates Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation pH pH, standard deviation Carbon dioxide Carbon dioxide, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Alkalinity, total Alkalinity, total, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide in seawater, standard deviation Calculated using seacarb after Nisumaa et al. 2010 Calculated using seacarb after Orr et al. 2018 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2022 ftdatacite https://doi.org/10.1594/pangaea.95228110.1111/mec.1664410.5281/zenodo.6908630 2024-04-02T11:36:31Z Sublethal exposure to environmental challenges may enhance ability to cope with chronic or repeated change, a process known as priming. In a previous study, pre-exposure to seawater enriched with pCO2 improved growth and reduced antioxidant capacity of juvenile Pacific geoduck Panopea generosa clams, suggesting that transcriptional shifts may drive phenotypic modifications post-priming. To this end, juvenile clams were sampled and TagSeq gene expression data were analysed after (i) a 110-day acclimation under ambient (921 μatm, naïve) and moderately elevated pCO2 (2870 μatm, pre-exposed); then following (ii) a second 7-day exposure to three pCO2 treatments (ambient: 754 μatm; moderately elevated: 2750 μatm; severely elevated: 4940 μatm), a 7-day return to ambient pCO2 and a third 7-day exposure to two pCO2 treatments (ambient: 967 μatm; moderately elevated: 3030 μatm). Pre-exposed geoducks frontloaded genes for stress and apoptosis/innate immune response, homeostatic processes, protein degradation and ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-12-12. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Animalia Benthic animals Benthos Bottles or small containers/Aquaria <20 L Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Mollusca North Pacific Panopea generosa Single species Temperate Type Species, unique identification Experiment Treatment Replicates Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation pH pH, standard deviation Carbon dioxide Carbon dioxide, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Alkalinity, total Alkalinity, total, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide in seawater, standard deviation Calculated using seacarb after Nisumaa et al. 2010 Calculated using seacarb after Orr et al. 2018 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Benthic animals Benthos Bottles or small containers/Aquaria <20 L Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Mollusca North Pacific Panopea generosa Single species Temperate Type Species, unique identification Experiment Treatment Replicates Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation pH pH, standard deviation Carbon dioxide Carbon dioxide, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Alkalinity, total Alkalinity, total, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide in seawater, standard deviation Calculated using seacarb after Nisumaa et al. 2010 Calculated using seacarb after Orr et al. 2018 Ocean Acidification International Coordination Centre OA-ICC Gurr, Samuel J Trigg, Shelly A Vadopalas, Brent Roberts, Steven B Putnam, H M Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
topic_facet |
Animalia Benthic animals Benthos Bottles or small containers/Aquaria <20 L Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Mollusca North Pacific Panopea generosa Single species Temperate Type Species, unique identification Experiment Treatment Replicates Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation pH pH, standard deviation Carbon dioxide Carbon dioxide, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Alkalinity, total Alkalinity, total, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Calcite saturation state, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide in seawater, standard deviation Calculated using seacarb after Nisumaa et al. 2010 Calculated using seacarb after Orr et al. 2018 Ocean Acidification International Coordination Centre OA-ICC |
description |
Sublethal exposure to environmental challenges may enhance ability to cope with chronic or repeated change, a process known as priming. In a previous study, pre-exposure to seawater enriched with pCO2 improved growth and reduced antioxidant capacity of juvenile Pacific geoduck Panopea generosa clams, suggesting that transcriptional shifts may drive phenotypic modifications post-priming. To this end, juvenile clams were sampled and TagSeq gene expression data were analysed after (i) a 110-day acclimation under ambient (921 μatm, naïve) and moderately elevated pCO2 (2870 μatm, pre-exposed); then following (ii) a second 7-day exposure to three pCO2 treatments (ambient: 754 μatm; moderately elevated: 2750 μatm; severely elevated: 4940 μatm), a 7-day return to ambient pCO2 and a third 7-day exposure to two pCO2 treatments (ambient: 967 μatm; moderately elevated: 3030 μatm). Pre-exposed geoducks frontloaded genes for stress and apoptosis/innate immune response, homeostatic processes, protein degradation and ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-12-12. ... |
format |
Dataset |
author |
Gurr, Samuel J Trigg, Shelly A Vadopalas, Brent Roberts, Steven B Putnam, H M |
author_facet |
Gurr, Samuel J Trigg, Shelly A Vadopalas, Brent Roberts, Steven B Putnam, H M |
author_sort |
Gurr, Samuel J |
title |
Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
title_short |
Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
title_full |
Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
title_fullStr |
Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
title_full_unstemmed |
Seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pCO2 ... |
title_sort |
seawater carbonate chemistry of experiment on acclimatory gene expression of primed clams enhances robustness to elevated pco2 ... |
publisher |
PANGAEA |
publishDate |
2022 |
url |
https://dx.doi.org/10.1594/pangaea.952281 https://doi.pangaea.de/10.1594/PANGAEA.952281 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1111/mec.16644 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.5281/zenodo.6908630 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.1594/pangaea.95228110.1111/mec.1664410.5281/zenodo.6908630 |
_version_ |
1797591387451949056 |