Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...

Large Benthic Foraminifera are a crucial component of coral-reef ecosystems, which are currently threatened by ocean acidification. We conducted culture experiments to evaluate the impact of low pH on survival and test dissolution of the symbiont-bearing species Peneroplis spp., and to observe poten...

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Main Authors: Charrieau, Laurie M, Nagai, Yukiko, Kimoto, Katsunori, Below, Beatrice, Fujita, Kazuhiko, Toyofuku, Takashi
Format: Dataset
Language:English
Published: PANGAEA 2022
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.947963
https://doi.pangaea.de/10.1594/PANGAEA.947963
id ftdatacite:10.1594/pangaea.947963
record_format openpolar
spelling ftdatacite:10.1594/pangaea.947963 2024-04-28T08:34:50+00:00 Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ... Charrieau, Laurie M Nagai, Yukiko Kimoto, Katsunori Below, Beatrice Fujita, Kazuhiko Toyofuku, Takashi 2022 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.947963 https://doi.pangaea.de/10.1594/PANGAEA.947963 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1038/s41598-022-10375-w https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Benthos Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Calcification/Dissolution Chromista Coast and continental shelf Foraminifera Heterotrophic prokaryotes Laboratory experiment North Pacific Peneroplis sp. Single species Temperate Type Species Experiment Experiment day Treatment pH Replicate Density Treatment Identification Boron/Calcium ratio Boron/Calcium ratio, standard deviation Zinc/Calcium ratio Zinc/Calcium ratio, standard deviation Magnesium/Calcium ratio Magnesium/Calcium ratio, standard deviation Strontium/Calcium ratio Strontium/Calcium ratio, standard deviation Manganese/Calcium ratio Manganese/Calcium ratio, standard deviation Temperature, water Salinity Salinity, standard deviation pH pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Calcite saturation state Carbonate ion Calcium Carbonate system computation flag Carbon dioxide Carbon dioxide, standard deviation Fugacity of carbon dioxide water at sea surface temperature wet air Fugacity of carbon dioxide in seawater, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion dataset Dataset 2022 ftdatacite https://doi.org/10.1594/pangaea.94796310.1038/s41598-022-10375-w 2024-04-02T11:36:31Z Large Benthic Foraminifera are a crucial component of coral-reef ecosystems, which are currently threatened by ocean acidification. We conducted culture experiments to evaluate the impact of low pH on survival and test dissolution of the symbiont-bearing species Peneroplis spp., and to observe potential calcification recovery when specimens are placed back under reference pH value (7.9). We found that Peneroplis spp. displayed living activity up to 3 days at pH 6.9 (Omega cal < 1) or up to 1 month at pH 7.4 (Omega cal > 1), despite the dark and unfed conditions. Dissolution features were observed under low Omega cal values, such as changes in test density, peeled extrados layers, and decalcified tests with exposed organic linings. A new calcification phase started when specimens were placed back at reference pH. This calcification's resumption was an addition of new chambers without reparation of the dissolved parts, which is consistent with the porcelaneous calcification pathway of Peneroplis spp. The ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-09-06. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Benthos
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Chromista
Coast and continental shelf
Foraminifera
Heterotrophic prokaryotes
Laboratory experiment
North Pacific
Peneroplis sp.
Single species
Temperate
Type
Species
Experiment
Experiment day
Treatment pH
Replicate
Density
Treatment
Identification
Boron/Calcium ratio
Boron/Calcium ratio, standard deviation
Zinc/Calcium ratio
Zinc/Calcium ratio, standard deviation
Magnesium/Calcium ratio
Magnesium/Calcium ratio, standard deviation
Strontium/Calcium ratio
Strontium/Calcium ratio, standard deviation
Manganese/Calcium ratio
Manganese/Calcium ratio, standard deviation
Temperature, water
Salinity
Salinity, standard deviation
pH
pH, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Calcite saturation state
Carbonate ion
Calcium
Carbonate system computation flag
Carbon dioxide
Carbon dioxide, standard deviation
Fugacity of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide in seawater, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Bicarbonate ion
spellingShingle Benthos
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Chromista
Coast and continental shelf
Foraminifera
Heterotrophic prokaryotes
Laboratory experiment
North Pacific
Peneroplis sp.
Single species
Temperate
Type
Species
Experiment
Experiment day
Treatment pH
Replicate
Density
Treatment
Identification
Boron/Calcium ratio
Boron/Calcium ratio, standard deviation
Zinc/Calcium ratio
Zinc/Calcium ratio, standard deviation
Magnesium/Calcium ratio
Magnesium/Calcium ratio, standard deviation
Strontium/Calcium ratio
Strontium/Calcium ratio, standard deviation
Manganese/Calcium ratio
Manganese/Calcium ratio, standard deviation
Temperature, water
Salinity
Salinity, standard deviation
pH
pH, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Calcite saturation state
Carbonate ion
Calcium
Carbonate system computation flag
Carbon dioxide
Carbon dioxide, standard deviation
Fugacity of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide in seawater, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Bicarbonate ion
Charrieau, Laurie M
Nagai, Yukiko
Kimoto, Katsunori
Below, Beatrice
Fujita, Kazuhiko
Toyofuku, Takashi
Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
topic_facet Benthos
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Calcification/Dissolution
Chromista
Coast and continental shelf
Foraminifera
Heterotrophic prokaryotes
Laboratory experiment
North Pacific
Peneroplis sp.
Single species
Temperate
Type
Species
Experiment
Experiment day
Treatment pH
Replicate
Density
Treatment
Identification
Boron/Calcium ratio
Boron/Calcium ratio, standard deviation
Zinc/Calcium ratio
Zinc/Calcium ratio, standard deviation
Magnesium/Calcium ratio
Magnesium/Calcium ratio, standard deviation
Strontium/Calcium ratio
Strontium/Calcium ratio, standard deviation
Manganese/Calcium ratio
Manganese/Calcium ratio, standard deviation
Temperature, water
Salinity
Salinity, standard deviation
pH
pH, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Calcite saturation state
Carbonate ion
Calcium
Carbonate system computation flag
Carbon dioxide
Carbon dioxide, standard deviation
Fugacity of carbon dioxide water at sea surface temperature wet air
Fugacity of carbon dioxide in seawater, standard deviation
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Bicarbonate ion
description Large Benthic Foraminifera are a crucial component of coral-reef ecosystems, which are currently threatened by ocean acidification. We conducted culture experiments to evaluate the impact of low pH on survival and test dissolution of the symbiont-bearing species Peneroplis spp., and to observe potential calcification recovery when specimens are placed back under reference pH value (7.9). We found that Peneroplis spp. displayed living activity up to 3 days at pH 6.9 (Omega cal < 1) or up to 1 month at pH 7.4 (Omega cal > 1), despite the dark and unfed conditions. Dissolution features were observed under low Omega cal values, such as changes in test density, peeled extrados layers, and decalcified tests with exposed organic linings. A new calcification phase started when specimens were placed back at reference pH. This calcification's resumption was an addition of new chambers without reparation of the dissolved parts, which is consistent with the porcelaneous calcification pathway of Peneroplis spp. The ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-09-06. ...
format Dataset
author Charrieau, Laurie M
Nagai, Yukiko
Kimoto, Katsunori
Below, Beatrice
Fujita, Kazuhiko
Toyofuku, Takashi
author_facet Charrieau, Laurie M
Nagai, Yukiko
Kimoto, Katsunori
Below, Beatrice
Fujita, Kazuhiko
Toyofuku, Takashi
author_sort Charrieau, Laurie M
title Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
title_short Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
title_full Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
title_fullStr Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
title_full_unstemmed Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp. ...
title_sort seawater carbonate chemistry and test density, trace elements ratios of peneroplis spp. ...
publisher PANGAEA
publishDate 2022
url https://dx.doi.org/10.1594/pangaea.947963
https://doi.pangaea.de/10.1594/PANGAEA.947963
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1038/s41598-022-10375-w
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.94796310.1038/s41598-022-10375-w
_version_ 1797591378123816960