CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ...
Sample C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (position: 64.1110°N, 8.1187°E, 303 m water depth; white colourmorp. The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Kli...
Main Authors: | , , , , , , |
---|---|
Format: | Dataset |
Language: | English |
Published: |
PANGAEA
2022
|
Subjects: | |
Online Access: | https://dx.doi.org/10.1594/pangaea.947276 https://doi.pangaea.de/10.1594/PANGAEA.947276 |
id |
ftdatacite:10.1594/pangaea.947276 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.1594/pangaea.947276 2024-04-28T08:27:58+00:00 CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... Titschack, Jürgen Schmitt, Benedikt Baum, Daniel Büscher, Janina Form, Armin Timann, Christian Lemke, Arne-Jörn 2022 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.947276 https://doi.pangaea.de/10.1594/PANGAEA.947276 en eng PANGAEA https://dx.doi.org/10.2312/vcbm.20221189 https://dx.doi.org/10.7717/peerj.7586 https://dx.doi.org/10.3289/cr_pos_455 https://dx.doi.org/10.1016/b978-012387582-2/50040-x Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 calice segmentation Computed Tomography Desmophyllum dianthus Lophelia pertusa polyp-cavity segmentation Binary Object Binary Object Media Type Binary Object File Size Submersible JAGO Center for Marine Environmental Sciences MARUM dataset Dataset 2022 ftdatacite https://doi.org/10.1594/pangaea.94727610.2312/vcbm.2022118910.7717/peerj.758610.3289/cr_pos_45510.1016/b978-012387582-2/50040-x 2024-04-02T09:48:38Z Sample C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (position: 64.1110°N, 8.1187°E, 303 m water depth; white colourmorp. The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stack has a resolution of 0.35 mm in x-direction and y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format.Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted). ... Dataset Lophelia pertusa DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
calice segmentation Computed Tomography Desmophyllum dianthus Lophelia pertusa polyp-cavity segmentation Binary Object Binary Object Media Type Binary Object File Size Submersible JAGO Center for Marine Environmental Sciences MARUM |
spellingShingle |
calice segmentation Computed Tomography Desmophyllum dianthus Lophelia pertusa polyp-cavity segmentation Binary Object Binary Object Media Type Binary Object File Size Submersible JAGO Center for Marine Environmental Sciences MARUM Titschack, Jürgen Schmitt, Benedikt Baum, Daniel Büscher, Janina Form, Armin Timann, Christian Lemke, Arne-Jörn CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
topic_facet |
calice segmentation Computed Tomography Desmophyllum dianthus Lophelia pertusa polyp-cavity segmentation Binary Object Binary Object Media Type Binary Object File Size Submersible JAGO Center for Marine Environmental Sciences MARUM |
description |
Sample C1W originates from Sula reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (position: 64.1110°N, 8.1187°E, 303 m water depth; white colourmorp. The coral colony fragment was scanned by a Toshiba Aquilion 64 computer tomograph (CT) at the hospital Klinikum Bremen-Mitte with an x-ray source voltage of 120 kV and a current of 600 mA. The CT image stack has a resolution of 0.35 mm in x-direction and y-direction and 0.5 mm resolution in z-direction (0.3 mm reconstruction unit). Images were reconstructed using Toshiba's patented helical cone beam reconstruction technique (TCOT) and are provided in DICOM-format.Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted). ... |
format |
Dataset |
author |
Titschack, Jürgen Schmitt, Benedikt Baum, Daniel Büscher, Janina Form, Armin Timann, Christian Lemke, Arne-Jörn |
author_facet |
Titschack, Jürgen Schmitt, Benedikt Baum, Daniel Büscher, Janina Form, Armin Timann, Christian Lemke, Arne-Jörn |
author_sort |
Titschack, Jürgen |
title |
CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
title_short |
CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
title_full |
CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
title_fullStr |
CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
title_full_unstemmed |
CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment C1W ... |
title_sort |
ct raw data and polyp-cavity segmentation (both dicom format) of coral colony fragment c1w ... |
publisher |
PANGAEA |
publishDate |
2022 |
url |
https://dx.doi.org/10.1594/pangaea.947276 https://doi.pangaea.de/10.1594/PANGAEA.947276 |
genre |
Lophelia pertusa |
genre_facet |
Lophelia pertusa |
op_relation |
https://dx.doi.org/10.2312/vcbm.20221189 https://dx.doi.org/10.7717/peerj.7586 https://dx.doi.org/10.3289/cr_pos_455 https://dx.doi.org/10.1016/b978-012387582-2/50040-x |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.1594/pangaea.94727610.2312/vcbm.2022118910.7717/peerj.758610.3289/cr_pos_45510.1016/b978-012387582-2/50040-x |
_version_ |
1797586681740656640 |