Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ...
Ocean acidification (OA) has both detrimental as well as beneficial effects on marine life; it negatively affects calcifiers while enhancing the productivity of photosynthetic organisms. To date, many studies have focused on the impacts of OA on calcification in reef-building corals, a process parti...
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Online Access: | https://dx.doi.org/10.1594/pangaea.939814 https://doi.pangaea.de/10.1594/PANGAEA.939814 |
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ftdatacite:10.1594/pangaea.939814 2024-04-28T08:34:41+00:00 Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... Herrera, Marcela Liew, Yi Jin Venn, Alexander A Tambutté, Eric Zoccola, Didier Tambutté, Sylvie Cui, Guoxin Aranda, Manuel 2021 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.939814 https://doi.pangaea.de/10.1594/PANGAEA.939814 en eng PANGAEA https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386774 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3389/fmicb.2021.666510 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386774 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Chromista Gene expression incl. proteomics Laboratory experiment Laboratory strains Myzozoa Not applicable Phytoplankton Primary production/Photosynthesis Single species Symbiodinium microadriaticum Type Species Registration number of species Uniform resource locator/link to reference Duration Treatment Sample ID Photosynthetic efficiency Photosynthetic efficiency, standard error Gene name Direction Fold change Salinity Temperature, water pH pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2021 ftdatacite https://doi.org/10.1594/pangaea.93981410.3389/fmicb.2021.666510 2024-04-02T11:36:31Z Ocean acidification (OA) has both detrimental as well as beneficial effects on marine life; it negatively affects calcifiers while enhancing the productivity of photosynthetic organisms. To date, many studies have focused on the impacts of OA on calcification in reef-building corals, a process particularly susceptible to acidification. However, little is known about the effects of OA on their photosynthetic algal partners, with some studies suggesting potential benefits for symbiont productivity. Here, we investigated the transcriptomic response of the endosymbiont Symbiodinium microadriaticum (CCMP2467) in the Red Sea coral Stylophora pistillata subjected to different long-term (2 years) OA treatments (pH 8.0, 7.8, 7.4, 7.2). Transcriptomic analyses revealed that symbionts from corals under lower pH treatments responded to acidification by increasing the expression of genes related to photosynthesis and carbon-concentrating mechanisms. These processes were mostly up-regulated and associated metabolic ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-12-24. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Chromista Gene expression incl. proteomics Laboratory experiment Laboratory strains Myzozoa Not applicable Phytoplankton Primary production/Photosynthesis Single species Symbiodinium microadriaticum Type Species Registration number of species Uniform resource locator/link to reference Duration Treatment Sample ID Photosynthetic efficiency Photosynthetic efficiency, standard error Gene name Direction Fold change Salinity Temperature, water pH pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Chromista Gene expression incl. proteomics Laboratory experiment Laboratory strains Myzozoa Not applicable Phytoplankton Primary production/Photosynthesis Single species Symbiodinium microadriaticum Type Species Registration number of species Uniform resource locator/link to reference Duration Treatment Sample ID Photosynthetic efficiency Photosynthetic efficiency, standard error Gene name Direction Fold change Salinity Temperature, water pH pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Herrera, Marcela Liew, Yi Jin Venn, Alexander A Tambutté, Eric Zoccola, Didier Tambutté, Sylvie Cui, Guoxin Aranda, Manuel Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
topic_facet |
Chromista Gene expression incl. proteomics Laboratory experiment Laboratory strains Myzozoa Not applicable Phytoplankton Primary production/Photosynthesis Single species Symbiodinium microadriaticum Type Species Registration number of species Uniform resource locator/link to reference Duration Treatment Sample ID Photosynthetic efficiency Photosynthetic efficiency, standard error Gene name Direction Fold change Salinity Temperature, water pH pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Carbonate ion Carbonate ion, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Ocean acidification (OA) has both detrimental as well as beneficial effects on marine life; it negatively affects calcifiers while enhancing the productivity of photosynthetic organisms. To date, many studies have focused on the impacts of OA on calcification in reef-building corals, a process particularly susceptible to acidification. However, little is known about the effects of OA on their photosynthetic algal partners, with some studies suggesting potential benefits for symbiont productivity. Here, we investigated the transcriptomic response of the endosymbiont Symbiodinium microadriaticum (CCMP2467) in the Red Sea coral Stylophora pistillata subjected to different long-term (2 years) OA treatments (pH 8.0, 7.8, 7.4, 7.2). Transcriptomic analyses revealed that symbionts from corals under lower pH treatments responded to acidification by increasing the expression of genes related to photosynthesis and carbon-concentrating mechanisms. These processes were mostly up-regulated and associated metabolic ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-12-24. ... |
format |
Dataset |
author |
Herrera, Marcela Liew, Yi Jin Venn, Alexander A Tambutté, Eric Zoccola, Didier Tambutté, Sylvie Cui, Guoxin Aranda, Manuel |
author_facet |
Herrera, Marcela Liew, Yi Jin Venn, Alexander A Tambutté, Eric Zoccola, Didier Tambutté, Sylvie Cui, Guoxin Aranda, Manuel |
author_sort |
Herrera, Marcela |
title |
Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
title_short |
Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
title_full |
Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
title_fullStr |
Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
title_full_unstemmed |
Seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the Symbiodinium microadriaticum ... |
title_sort |
seawater carbonate chemistry and photochemical efficiency and differentially expressed genes of the symbiodinium microadriaticum ... |
publisher |
PANGAEA |
publishDate |
2021 |
url |
https://dx.doi.org/10.1594/pangaea.939814 https://doi.pangaea.de/10.1594/PANGAEA.939814 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386774 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3389/fmicb.2021.666510 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386774 https://cran.r-project.org/web/packages/seacarb/index.html |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.1594/pangaea.93981410.3389/fmicb.2021.666510 |
_version_ |
1797591274088300544 |