Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates

Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, th...

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Main Authors: Ulrich, Robert N, Guillermic, Maxence, Campbell, Julia, Hakim, Abbas, Han, Rachel, Singh, Shayleen, Stewart, Justin D, Román-Palacios, Cristian, Carroll, Hannah M, De Corte, Ilian, Gilmore, Rosaleen E, Doss, Whitney, Tripati, Aradhna K, Ries, Justin B, Eagle, Robert A
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2021
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.933051
https://doi.pangaea.de/10.1594/PANGAEA.933051
id ftdatacite:10.1594/pangaea.933051
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Animalia
Annelida
Arbacia punctulata
Argopecten irradians
Arthropoda
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Callinectes sapidus
Chlorophyta
Cnidaria
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Crepidula fornicata
Echinodermata
Eucidaris tribuloides
Halimeda incrassata
Homarus americanus
Hydroides crucigera
Laboratory experiment
Littorina littorea
Macroalgae
Mercenaria mercenaria
Mollusca
Mya arenaria
Mytilus edulis
Neogoniolithon spectabile
North Atlantic
Oculina arbuscula
Penaeus plebejus
Plantae
Rhodophyta
Single species
Strombus alatus
Temperate
Urosalpinx cinerea
Type
Species
Registration number of species
Uniform resource locator/link to reference
Organisms
Identification
Material
Phylum
Carbon dioxide, partial pressure
Instrument
Lithium/Calcium ratio
Boron/Calcium ratio
Magnesium/Calcium ratio
Zinc/Calcium ratio
Strontium/Calcium ratio
Cadmium/Calcium ratio
Barium/Calcium ratio
Uranium/Calcium ratio
Sodium/Calcium ratio
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Salinity
Salinity, standard deviation
Temperature, water
Temperature, water, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Apparent partition coefficient, lithium
Apparent partition coefficient, boron
Apparent partition coefficient, magnesium
Apparent partition coefficient, zinc
Apparent partition coefficient, strontium
Apparent partition coefficient, cadmium
Apparent partition coefficient, barium
Apparent partition coefficient, uranium
Apparent partition coefficient, sodium
Apparent partition coefficient, boron to calcite incorporation x1000
Apparent partition coefficient, boron to aragonite incorporation x1000
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Animalia
Annelida
Arbacia punctulata
Argopecten irradians
Arthropoda
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Callinectes sapidus
Chlorophyta
Cnidaria
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Crepidula fornicata
Echinodermata
Eucidaris tribuloides
Halimeda incrassata
Homarus americanus
Hydroides crucigera
Laboratory experiment
Littorina littorea
Macroalgae
Mercenaria mercenaria
Mollusca
Mya arenaria
Mytilus edulis
Neogoniolithon spectabile
North Atlantic
Oculina arbuscula
Penaeus plebejus
Plantae
Rhodophyta
Single species
Strombus alatus
Temperate
Urosalpinx cinerea
Type
Species
Registration number of species
Uniform resource locator/link to reference
Organisms
Identification
Material
Phylum
Carbon dioxide, partial pressure
Instrument
Lithium/Calcium ratio
Boron/Calcium ratio
Magnesium/Calcium ratio
Zinc/Calcium ratio
Strontium/Calcium ratio
Cadmium/Calcium ratio
Barium/Calcium ratio
Uranium/Calcium ratio
Sodium/Calcium ratio
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Salinity
Salinity, standard deviation
Temperature, water
Temperature, water, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Apparent partition coefficient, lithium
Apparent partition coefficient, boron
Apparent partition coefficient, magnesium
Apparent partition coefficient, zinc
Apparent partition coefficient, strontium
Apparent partition coefficient, cadmium
Apparent partition coefficient, barium
Apparent partition coefficient, uranium
Apparent partition coefficient, sodium
Apparent partition coefficient, boron to calcite incorporation x1000
Apparent partition coefficient, boron to aragonite incorporation x1000
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Ulrich, Robert N
Guillermic, Maxence
Campbell, Julia
Hakim, Abbas
Han, Rachel
Singh, Shayleen
Stewart, Justin D
Román-Palacios, Cristian
Carroll, Hannah M
De Corte, Ilian
Gilmore, Rosaleen E
Doss, Whitney
Tripati, Aradhna K
Ries, Justin B
Eagle, Robert A
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
topic_facet Animalia
Annelida
Arbacia punctulata
Argopecten irradians
Arthropoda
Benthic animals
Benthos
Biomass/Abundance/Elemental composition
Callinectes sapidus
Chlorophyta
Cnidaria
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Crassostrea virginica
Crepidula fornicata
Echinodermata
Eucidaris tribuloides
Halimeda incrassata
Homarus americanus
Hydroides crucigera
Laboratory experiment
Littorina littorea
Macroalgae
Mercenaria mercenaria
Mollusca
Mya arenaria
Mytilus edulis
Neogoniolithon spectabile
North Atlantic
Oculina arbuscula
Penaeus plebejus
Plantae
Rhodophyta
Single species
Strombus alatus
Temperate
Urosalpinx cinerea
Type
Species
Registration number of species
Uniform resource locator/link to reference
Organisms
Identification
Material
Phylum
Carbon dioxide, partial pressure
Instrument
Lithium/Calcium ratio
Boron/Calcium ratio
Magnesium/Calcium ratio
Zinc/Calcium ratio
Strontium/Calcium ratio
Cadmium/Calcium ratio
Barium/Calcium ratio
Uranium/Calcium ratio
Sodium/Calcium ratio
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide, standard deviation
Salinity
Salinity, standard deviation
Temperature, water
Temperature, water, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
pH
pH, standard deviation
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard deviation
Carbonate ion
Carbonate ion, standard deviation
Bicarbonate ion
Bicarbonate ion, standard deviation
Aragonite saturation state
Aragonite saturation state, standard deviation
Calcite saturation state
Apparent partition coefficient, lithium
Apparent partition coefficient, boron
Apparent partition coefficient, magnesium
Apparent partition coefficient, zinc
Apparent partition coefficient, strontium
Apparent partition coefficient, cadmium
Apparent partition coefficient, barium
Apparent partition coefficient, uranium
Apparent partition coefficient, sodium
Apparent partition coefficient, boron to calcite incorporation x1000
Apparent partition coefficient, boron to aragonite incorporation x1000
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of pCO2 treatments (ca. 409, 606, 903, and 2856 ppm). This dataset was used to explore various controls over elemental partitioning in biogenic marine carbonates, including species-level and biomineralization-pathway-level controls, the influence of internal pH regulation compared to external pH changes, and biocalcification responses to changes in seawater carbonate chemistry. The dataset also enables exploration of broad scale phylogenetic patterns of elemental partitioning across calcifying species, exhibiting high phylogenetic signals estimated from both uni- and multivariate analyses of the elemental ratio data (univariate: lambda = 0–0.889; multivariate: lambda = 0.895–0.99). Comparing partial R2 values returned from non-phylogenetic and phylogenetic regression analyses echo the importance of and show that phylogeny explains the elemental ratio data 1.4–59 times better than mineralogy in five out of nine of the elements analyzed. Therefore, the strong associations between biomineral elemental chemistry and species relatedness suggests mechanistic controls over element incorporation rooted in the evolution of biomineralization mechanisms. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-06-24.
format Dataset
author Ulrich, Robert N
Guillermic, Maxence
Campbell, Julia
Hakim, Abbas
Han, Rachel
Singh, Shayleen
Stewart, Justin D
Román-Palacios, Cristian
Carroll, Hannah M
De Corte, Ilian
Gilmore, Rosaleen E
Doss, Whitney
Tripati, Aradhna K
Ries, Justin B
Eagle, Robert A
author_facet Ulrich, Robert N
Guillermic, Maxence
Campbell, Julia
Hakim, Abbas
Han, Rachel
Singh, Shayleen
Stewart, Justin D
Román-Palacios, Cristian
Carroll, Hannah M
De Corte, Ilian
Gilmore, Rosaleen E
Doss, Whitney
Tripati, Aradhna K
Ries, Justin B
Eagle, Robert A
author_sort Ulrich, Robert N
title Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
title_short Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
title_full Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
title_fullStr Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
title_full_unstemmed Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
title_sort seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2021
url https://dx.doi.org/10.1594/pangaea.933051
https://doi.pangaea.de/10.1594/PANGAEA.933051
long_lat ENVELOPE(-62.983,-62.983,-64.300,-64.300)
geographic Lambda
geographic_facet Lambda
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.3389/feart.2021.641760
https://dx.doi.org/10.1594/pangaea.918128
https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1594/pangaea.733947
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.933051
https://doi.org/10.3389/feart.2021.641760
https://doi.org/10.1594/pangaea.918128
https://doi.org/10.1594/pangaea.733947
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spelling ftdatacite:10.1594/pangaea.933051 2023-05-15T17:37:28+02:00 Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates Ulrich, Robert N Guillermic, Maxence Campbell, Julia Hakim, Abbas Han, Rachel Singh, Shayleen Stewart, Justin D Román-Palacios, Cristian Carroll, Hannah M De Corte, Ilian Gilmore, Rosaleen E Doss, Whitney Tripati, Aradhna K Ries, Justin B Eagle, Robert A 2021 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.933051 https://doi.pangaea.de/10.1594/PANGAEA.933051 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3389/feart.2021.641760 https://dx.doi.org/10.1594/pangaea.918128 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1594/pangaea.733947 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Annelida Arbacia punctulata Argopecten irradians Arthropoda Benthic animals Benthos Biomass/Abundance/Elemental composition Callinectes sapidus Chlorophyta Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Crepidula fornicata Echinodermata Eucidaris tribuloides Halimeda incrassata Homarus americanus Hydroides crucigera Laboratory experiment Littorina littorea Macroalgae Mercenaria mercenaria Mollusca Mya arenaria Mytilus edulis Neogoniolithon spectabile North Atlantic Oculina arbuscula Penaeus plebejus Plantae Rhodophyta Single species Strombus alatus Temperate Urosalpinx cinerea Type Species Registration number of species Uniform resource locator/link to reference Organisms Identification Material Phylum Carbon dioxide, partial pressure Instrument Lithium/Calcium ratio Boron/Calcium ratio Magnesium/Calcium ratio Zinc/Calcium ratio Strontium/Calcium ratio Cadmium/Calcium ratio Barium/Calcium ratio Uranium/Calcium ratio Sodium/Calcium ratio Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Apparent partition coefficient, lithium Apparent partition coefficient, boron Apparent partition coefficient, magnesium Apparent partition coefficient, zinc Apparent partition coefficient, strontium Apparent partition coefficient, cadmium Apparent partition coefficient, barium Apparent partition coefficient, uranium Apparent partition coefficient, sodium Apparent partition coefficient, boron to calcite incorporation x1000 Apparent partition coefficient, boron to aragonite incorporation x1000 Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2021 ftdatacite https://doi.org/10.1594/pangaea.933051 https://doi.org/10.3389/feart.2021.641760 https://doi.org/10.1594/pangaea.918128 https://doi.org/10.1594/pangaea.733947 2021-11-05T12:55:41Z Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of pCO2 treatments (ca. 409, 606, 903, and 2856 ppm). This dataset was used to explore various controls over elemental partitioning in biogenic marine carbonates, including species-level and biomineralization-pathway-level controls, the influence of internal pH regulation compared to external pH changes, and biocalcification responses to changes in seawater carbonate chemistry. The dataset also enables exploration of broad scale phylogenetic patterns of elemental partitioning across calcifying species, exhibiting high phylogenetic signals estimated from both uni- and multivariate analyses of the elemental ratio data (univariate: lambda = 0–0.889; multivariate: lambda = 0.895–0.99). Comparing partial R2 values returned from non-phylogenetic and phylogenetic regression analyses echo the importance of and show that phylogeny explains the elemental ratio data 1.4–59 times better than mineralogy in five out of nine of the elements analyzed. Therefore, the strong associations between biomineral elemental chemistry and species relatedness suggests mechanistic controls over element incorporation rooted in the evolution of biomineralization mechanisms. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-06-24. Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Lambda ENVELOPE(-62.983,-62.983,-64.300,-64.300)