Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates
Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, th...
Main Authors: | , , , , , , , , , , , , , , |
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Format: | Dataset |
Language: | English |
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PANGAEA - Data Publisher for Earth & Environmental Science
2021
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Online Access: | https://dx.doi.org/10.1594/pangaea.933051 https://doi.pangaea.de/10.1594/PANGAEA.933051 |
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ftdatacite:10.1594/pangaea.933051 |
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openpolar |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Animalia Annelida Arbacia punctulata Argopecten irradians Arthropoda Benthic animals Benthos Biomass/Abundance/Elemental composition Callinectes sapidus Chlorophyta Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Crepidula fornicata Echinodermata Eucidaris tribuloides Halimeda incrassata Homarus americanus Hydroides crucigera Laboratory experiment Littorina littorea Macroalgae Mercenaria mercenaria Mollusca Mya arenaria Mytilus edulis Neogoniolithon spectabile North Atlantic Oculina arbuscula Penaeus plebejus Plantae Rhodophyta Single species Strombus alatus Temperate Urosalpinx cinerea Type Species Registration number of species Uniform resource locator/link to reference Organisms Identification Material Phylum Carbon dioxide, partial pressure Instrument Lithium/Calcium ratio Boron/Calcium ratio Magnesium/Calcium ratio Zinc/Calcium ratio Strontium/Calcium ratio Cadmium/Calcium ratio Barium/Calcium ratio Uranium/Calcium ratio Sodium/Calcium ratio Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Apparent partition coefficient, lithium Apparent partition coefficient, boron Apparent partition coefficient, magnesium Apparent partition coefficient, zinc Apparent partition coefficient, strontium Apparent partition coefficient, cadmium Apparent partition coefficient, barium Apparent partition coefficient, uranium Apparent partition coefficient, sodium Apparent partition coefficient, boron to calcite incorporation x1000 Apparent partition coefficient, boron to aragonite incorporation x1000 Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Annelida Arbacia punctulata Argopecten irradians Arthropoda Benthic animals Benthos Biomass/Abundance/Elemental composition Callinectes sapidus Chlorophyta Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Crepidula fornicata Echinodermata Eucidaris tribuloides Halimeda incrassata Homarus americanus Hydroides crucigera Laboratory experiment Littorina littorea Macroalgae Mercenaria mercenaria Mollusca Mya arenaria Mytilus edulis Neogoniolithon spectabile North Atlantic Oculina arbuscula Penaeus plebejus Plantae Rhodophyta Single species Strombus alatus Temperate Urosalpinx cinerea Type Species Registration number of species Uniform resource locator/link to reference Organisms Identification Material Phylum Carbon dioxide, partial pressure Instrument Lithium/Calcium ratio Boron/Calcium ratio Magnesium/Calcium ratio Zinc/Calcium ratio Strontium/Calcium ratio Cadmium/Calcium ratio Barium/Calcium ratio Uranium/Calcium ratio Sodium/Calcium ratio Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Apparent partition coefficient, lithium Apparent partition coefficient, boron Apparent partition coefficient, magnesium Apparent partition coefficient, zinc Apparent partition coefficient, strontium Apparent partition coefficient, cadmium Apparent partition coefficient, barium Apparent partition coefficient, uranium Apparent partition coefficient, sodium Apparent partition coefficient, boron to calcite incorporation x1000 Apparent partition coefficient, boron to aragonite incorporation x1000 Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Ulrich, Robert N Guillermic, Maxence Campbell, Julia Hakim, Abbas Han, Rachel Singh, Shayleen Stewart, Justin D Román-Palacios, Cristian Carroll, Hannah M De Corte, Ilian Gilmore, Rosaleen E Doss, Whitney Tripati, Aradhna K Ries, Justin B Eagle, Robert A Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
topic_facet |
Animalia Annelida Arbacia punctulata Argopecten irradians Arthropoda Benthic animals Benthos Biomass/Abundance/Elemental composition Callinectes sapidus Chlorophyta Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Crepidula fornicata Echinodermata Eucidaris tribuloides Halimeda incrassata Homarus americanus Hydroides crucigera Laboratory experiment Littorina littorea Macroalgae Mercenaria mercenaria Mollusca Mya arenaria Mytilus edulis Neogoniolithon spectabile North Atlantic Oculina arbuscula Penaeus plebejus Plantae Rhodophyta Single species Strombus alatus Temperate Urosalpinx cinerea Type Species Registration number of species Uniform resource locator/link to reference Organisms Identification Material Phylum Carbon dioxide, partial pressure Instrument Lithium/Calcium ratio Boron/Calcium ratio Magnesium/Calcium ratio Zinc/Calcium ratio Strontium/Calcium ratio Cadmium/Calcium ratio Barium/Calcium ratio Uranium/Calcium ratio Sodium/Calcium ratio Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Apparent partition coefficient, lithium Apparent partition coefficient, boron Apparent partition coefficient, magnesium Apparent partition coefficient, zinc Apparent partition coefficient, strontium Apparent partition coefficient, cadmium Apparent partition coefficient, barium Apparent partition coefficient, uranium Apparent partition coefficient, sodium Apparent partition coefficient, boron to calcite incorporation x1000 Apparent partition coefficient, boron to aragonite incorporation x1000 Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of pCO2 treatments (ca. 409, 606, 903, and 2856 ppm). This dataset was used to explore various controls over elemental partitioning in biogenic marine carbonates, including species-level and biomineralization-pathway-level controls, the influence of internal pH regulation compared to external pH changes, and biocalcification responses to changes in seawater carbonate chemistry. The dataset also enables exploration of broad scale phylogenetic patterns of elemental partitioning across calcifying species, exhibiting high phylogenetic signals estimated from both uni- and multivariate analyses of the elemental ratio data (univariate: lambda = 0–0.889; multivariate: lambda = 0.895–0.99). Comparing partial R2 values returned from non-phylogenetic and phylogenetic regression analyses echo the importance of and show that phylogeny explains the elemental ratio data 1.4–59 times better than mineralogy in five out of nine of the elements analyzed. Therefore, the strong associations between biomineral elemental chemistry and species relatedness suggests mechanistic controls over element incorporation rooted in the evolution of biomineralization mechanisms. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-06-24. |
format |
Dataset |
author |
Ulrich, Robert N Guillermic, Maxence Campbell, Julia Hakim, Abbas Han, Rachel Singh, Shayleen Stewart, Justin D Román-Palacios, Cristian Carroll, Hannah M De Corte, Ilian Gilmore, Rosaleen E Doss, Whitney Tripati, Aradhna K Ries, Justin B Eagle, Robert A |
author_facet |
Ulrich, Robert N Guillermic, Maxence Campbell, Julia Hakim, Abbas Han, Rachel Singh, Shayleen Stewart, Justin D Román-Palacios, Cristian Carroll, Hannah M De Corte, Ilian Gilmore, Rosaleen E Doss, Whitney Tripati, Aradhna K Ries, Justin B Eagle, Robert A |
author_sort |
Ulrich, Robert N |
title |
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
title_short |
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
title_full |
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
title_fullStr |
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
title_full_unstemmed |
Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
title_sort |
seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2021 |
url |
https://dx.doi.org/10.1594/pangaea.933051 https://doi.pangaea.de/10.1594/PANGAEA.933051 |
long_lat |
ENVELOPE(-62.983,-62.983,-64.300,-64.300) |
geographic |
Lambda |
geographic_facet |
Lambda |
genre |
North Atlantic Ocean acidification |
genre_facet |
North Atlantic Ocean acidification |
op_relation |
https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3389/feart.2021.641760 https://dx.doi.org/10.1594/pangaea.918128 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1594/pangaea.733947 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.933051 https://doi.org/10.3389/feart.2021.641760 https://doi.org/10.1594/pangaea.918128 https://doi.org/10.1594/pangaea.733947 |
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1766137423586131968 |
spelling |
ftdatacite:10.1594/pangaea.933051 2023-05-15T17:37:28+02:00 Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates Ulrich, Robert N Guillermic, Maxence Campbell, Julia Hakim, Abbas Han, Rachel Singh, Shayleen Stewart, Justin D Román-Palacios, Cristian Carroll, Hannah M De Corte, Ilian Gilmore, Rosaleen E Doss, Whitney Tripati, Aradhna K Ries, Justin B Eagle, Robert A 2021 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.933051 https://doi.pangaea.de/10.1594/PANGAEA.933051 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.3389/feart.2021.641760 https://dx.doi.org/10.1594/pangaea.918128 https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1594/pangaea.733947 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Annelida Arbacia punctulata Argopecten irradians Arthropoda Benthic animals Benthos Biomass/Abundance/Elemental composition Callinectes sapidus Chlorophyta Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Crassostrea virginica Crepidula fornicata Echinodermata Eucidaris tribuloides Halimeda incrassata Homarus americanus Hydroides crucigera Laboratory experiment Littorina littorea Macroalgae Mercenaria mercenaria Mollusca Mya arenaria Mytilus edulis Neogoniolithon spectabile North Atlantic Oculina arbuscula Penaeus plebejus Plantae Rhodophyta Single species Strombus alatus Temperate Urosalpinx cinerea Type Species Registration number of species Uniform resource locator/link to reference Organisms Identification Material Phylum Carbon dioxide, partial pressure Instrument Lithium/Calcium ratio Boron/Calcium ratio Magnesium/Calcium ratio Zinc/Calcium ratio Strontium/Calcium ratio Cadmium/Calcium ratio Barium/Calcium ratio Uranium/Calcium ratio Sodium/Calcium ratio Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Salinity Salinity, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation pH pH, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Bicarbonate ion Bicarbonate ion, standard deviation Aragonite saturation state Aragonite saturation state, standard deviation Calcite saturation state Apparent partition coefficient, lithium Apparent partition coefficient, boron Apparent partition coefficient, magnesium Apparent partition coefficient, zinc Apparent partition coefficient, strontium Apparent partition coefficient, cadmium Apparent partition coefficient, barium Apparent partition coefficient, uranium Apparent partition coefficient, sodium Apparent partition coefficient, boron to calcite incorporation x1000 Apparent partition coefficient, boron to aragonite incorporation x1000 Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2021 ftdatacite https://doi.org/10.1594/pangaea.933051 https://doi.org/10.3389/feart.2021.641760 https://doi.org/10.1594/pangaea.918128 https://doi.org/10.1594/pangaea.733947 2021-11-05T12:55:41Z Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of pCO2 treatments (ca. 409, 606, 903, and 2856 ppm). This dataset was used to explore various controls over elemental partitioning in biogenic marine carbonates, including species-level and biomineralization-pathway-level controls, the influence of internal pH regulation compared to external pH changes, and biocalcification responses to changes in seawater carbonate chemistry. The dataset also enables exploration of broad scale phylogenetic patterns of elemental partitioning across calcifying species, exhibiting high phylogenetic signals estimated from both uni- and multivariate analyses of the elemental ratio data (univariate: lambda = 0–0.889; multivariate: lambda = 0.895–0.99). Comparing partial R2 values returned from non-phylogenetic and phylogenetic regression analyses echo the importance of and show that phylogeny explains the elemental ratio data 1.4–59 times better than mineralogy in five out of nine of the elements analyzed. Therefore, the strong associations between biomineral elemental chemistry and species relatedness suggests mechanistic controls over element incorporation rooted in the evolution of biomineralization mechanisms. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-06-24. Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Lambda ENVELOPE(-62.983,-62.983,-64.300,-64.300) |