Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...

Coral calcification relies on the transport of ions and molecules to the extracellular calcifying medium (ECM). Little is known about paracellular transport (via intercellular junctions) in corals and other marine calcifiers. Here, we investigated whether the permeability of the paracellular pathway...

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Main Authors: Venn, Alexander A, Bernardet, Coralie, Chabenat, Apolline, Tambutté, Eric, Tambutté, Sylvie
Format: Dataset
Language:English
Published: PANGAEA 2020
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.929464
https://doi.pangaea.de/10.1594/PANGAEA.929464
id ftdatacite:10.1594/pangaea.929464
record_format openpolar
spelling ftdatacite:10.1594/pangaea.929464 2024-02-27T08:44:14+00:00 Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ... Venn, Alexander A Bernardet, Coralie Chabenat, Apolline Tambutté, Eric Tambutté, Sylvie 2020 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.929464 https://doi.pangaea.de/10.1594/PANGAEA.929464 en eng PANGAEA https://cran.r-project.org/web/packages/seacarb/index.html https://dx.doi.org/10.1242/jeb.227074 https://dx.doi.org/10.1594/pangaea.918127 https://cran.r-project.org/web/packages/seacarb/index.html Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Acid-base regulation Animalia Benthic animals Benthos Calcification/Dissolution Cnidaria Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Laboratory strains Not applicable Other studied parameter or process Single species Stylophora pistillata Type Species Registration number of species Uniform resource locator/link to reference Treatment Time in minutes pH, extracellular pH, intracellular Distance Comment Temperature, water Salinity Alkalinity, total pH Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state Potentiometric titration Spectrophotometric Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2020 ftdatacite https://doi.org/10.1594/pangaea.92946410.1242/jeb.22707410.1594/pangaea.918127 2024-02-01T15:26:49Z Coral calcification relies on the transport of ions and molecules to the extracellular calcifying medium (ECM). Little is known about paracellular transport (via intercellular junctions) in corals and other marine calcifiers. Here, we investigated whether the permeability of the paracellular pathway varied in different environmental conditions in the coral Stylophora pistillata. Using the fluorescent dye calcein, we characterised the dynamics of calcein influx from seawater to the ECM and showed that increases in paracellular permeability (leakiness) induced by hyperosmotic treatment could be detected by changes in calcein influx rates. We then used the calcein-imaging approach to investigate the effects of two environmental stressors on paracellular permeability: seawater acidification and temperature change. Under conditions of seawater acidification (pH 7.2) known to depress pH in the ECM and the calcifying cells of S. pistillata, we observed a decrease in half-times of calcein influx, indicating ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-15. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Acid-base regulation
Animalia
Benthic animals
Benthos
Calcification/Dissolution
Cnidaria
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Laboratory strains
Not applicable
Other studied parameter or process
Single species
Stylophora pistillata
Type
Species
Registration number of species
Uniform resource locator/link to reference
Treatment
Time in minutes
pH, extracellular
pH, intracellular
Distance
Comment
Temperature, water
Salinity
Alkalinity, total
pH
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
Potentiometric titration
Spectrophotometric
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Acid-base regulation
Animalia
Benthic animals
Benthos
Calcification/Dissolution
Cnidaria
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Laboratory strains
Not applicable
Other studied parameter or process
Single species
Stylophora pistillata
Type
Species
Registration number of species
Uniform resource locator/link to reference
Treatment
Time in minutes
pH, extracellular
pH, intracellular
Distance
Comment
Temperature, water
Salinity
Alkalinity, total
pH
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
Potentiometric titration
Spectrophotometric
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Venn, Alexander A
Bernardet, Coralie
Chabenat, Apolline
Tambutté, Eric
Tambutté, Sylvie
Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
topic_facet Acid-base regulation
Animalia
Benthic animals
Benthos
Calcification/Dissolution
Cnidaria
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Laboratory strains
Not applicable
Other studied parameter or process
Single species
Stylophora pistillata
Type
Species
Registration number of species
Uniform resource locator/link to reference
Treatment
Time in minutes
pH, extracellular
pH, intracellular
Distance
Comment
Temperature, water
Salinity
Alkalinity, total
pH
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
Potentiometric titration
Spectrophotometric
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Coral calcification relies on the transport of ions and molecules to the extracellular calcifying medium (ECM). Little is known about paracellular transport (via intercellular junctions) in corals and other marine calcifiers. Here, we investigated whether the permeability of the paracellular pathway varied in different environmental conditions in the coral Stylophora pistillata. Using the fluorescent dye calcein, we characterised the dynamics of calcein influx from seawater to the ECM and showed that increases in paracellular permeability (leakiness) induced by hyperosmotic treatment could be detected by changes in calcein influx rates. We then used the calcein-imaging approach to investigate the effects of two environmental stressors on paracellular permeability: seawater acidification and temperature change. Under conditions of seawater acidification (pH 7.2) known to depress pH in the ECM and the calcifying cells of S. pistillata, we observed a decrease in half-times of calcein influx, indicating ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-15. ...
format Dataset
author Venn, Alexander A
Bernardet, Coralie
Chabenat, Apolline
Tambutté, Eric
Tambutté, Sylvie
author_facet Venn, Alexander A
Bernardet, Coralie
Chabenat, Apolline
Tambutté, Eric
Tambutté, Sylvie
author_sort Venn, Alexander A
title Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
title_short Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
title_full Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
title_fullStr Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
title_full_unstemmed Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata ...
title_sort seawater carbonate chemistry and half-time of calcein influx in the coral stylophora pistillata ...
publisher PANGAEA
publishDate 2020
url https://dx.doi.org/10.1594/pangaea.929464
https://doi.pangaea.de/10.1594/PANGAEA.929464
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/web/packages/seacarb/index.html
https://dx.doi.org/10.1242/jeb.227074
https://dx.doi.org/10.1594/pangaea.918127
https://cran.r-project.org/web/packages/seacarb/index.html
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.92946410.1242/jeb.22707410.1594/pangaea.918127
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