Seawater carbonate chemistry and respiration, primary production and composition of microbial community
Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual varia...
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PANGAEA - Data Publisher for Earth & Environmental Science
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ftdatacite:10.1594/pangaea.923999 2023-05-15T17:36:45+02:00 Seawater carbonate chemistry and respiration, primary production and composition of microbial community Wang, Z Tsementzi, Despina Williams, Tiffany C Juarez, Doris L Blinebry, Sara K Garcia, Nathan S Sienkiewicz, Brooke K Konstantinidis, Konstantinos T Johnson, Zackary I Hunt, Dana E 2021 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.923999 https://doi.pangaea.de/10.1594/PANGAEA.923999 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1038/s41396-020-00748-2 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Bottles or small containers/Aquaria <20 L Coast and continental shelf Community composition and diversity Entire community Laboratory experiment North Atlantic Pelagos Primary production/Photosynthesis Respiration Temperate Temperature Event label Type Day of experiment Identification Treatment Replicate Comment Chlorophyll a Respiration rate, oxygen Primary production of carbon per hour Cell density Salinity Temperature, water Carbon, inorganic, dissolved pH Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2021 ftdatacite https://doi.org/10.1594/pangaea.923999 https://doi.org/10.1038/s41396-020-00748-2 2022-02-08T17:10:29Z Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20. Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Bottles or small containers/Aquaria <20 L Coast and continental shelf Community composition and diversity Entire community Laboratory experiment North Atlantic Pelagos Primary production/Photosynthesis Respiration Temperate Temperature Event label Type Day of experiment Identification Treatment Replicate Comment Chlorophyll a Respiration rate, oxygen Primary production of carbon per hour Cell density Salinity Temperature, water Carbon, inorganic, dissolved pH Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Bottles or small containers/Aquaria <20 L Coast and continental shelf Community composition and diversity Entire community Laboratory experiment North Atlantic Pelagos Primary production/Photosynthesis Respiration Temperate Temperature Event label Type Day of experiment Identification Treatment Replicate Comment Chlorophyll a Respiration rate, oxygen Primary production of carbon per hour Cell density Salinity Temperature, water Carbon, inorganic, dissolved pH Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Wang, Z Tsementzi, Despina Williams, Tiffany C Juarez, Doris L Blinebry, Sara K Garcia, Nathan S Sienkiewicz, Brooke K Konstantinidis, Konstantinos T Johnson, Zackary I Hunt, Dana E Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
topic_facet |
Bottles or small containers/Aquaria <20 L Coast and continental shelf Community composition and diversity Entire community Laboratory experiment North Atlantic Pelagos Primary production/Photosynthesis Respiration Temperate Temperature Event label Type Day of experiment Identification Treatment Replicate Comment Chlorophyll a Respiration rate, oxygen Primary production of carbon per hour Cell density Salinity Temperature, water Carbon, inorganic, dissolved pH Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20. |
format |
Dataset |
author |
Wang, Z Tsementzi, Despina Williams, Tiffany C Juarez, Doris L Blinebry, Sara K Garcia, Nathan S Sienkiewicz, Brooke K Konstantinidis, Konstantinos T Johnson, Zackary I Hunt, Dana E |
author_facet |
Wang, Z Tsementzi, Despina Williams, Tiffany C Juarez, Doris L Blinebry, Sara K Garcia, Nathan S Sienkiewicz, Brooke K Konstantinidis, Konstantinos T Johnson, Zackary I Hunt, Dana E |
author_sort |
Wang, Z |
title |
Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
title_short |
Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
title_full |
Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
title_fullStr |
Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
title_full_unstemmed |
Seawater carbonate chemistry and respiration, primary production and composition of microbial community |
title_sort |
seawater carbonate chemistry and respiration, primary production and composition of microbial community |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2021 |
url |
https://dx.doi.org/10.1594/pangaea.923999 https://doi.pangaea.de/10.1594/PANGAEA.923999 |
genre |
North Atlantic Ocean acidification |
genre_facet |
North Atlantic Ocean acidification |
op_relation |
https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1038/s41396-020-00748-2 https://CRAN.R-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.923999 https://doi.org/10.1038/s41396-020-00748-2 |
_version_ |
1766136346141786112 |