Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the '...
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PANGAEA - Data Publisher for Earth & Environmental Science
2020
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Online Access: | https://dx.doi.org/10.1594/pangaea.923271 https://doi.pangaea.de/10.1594/PANGAEA.923271 |
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ftdatacite:10.1594/pangaea.923271 2023-05-15T17:33:00+02:00 Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 Busch, Kathrin Taboada, Sergi Riesgo, Ana Koutsouveli, Vasiliki Rios, Pilar Cristobo, Javier Franke, Andre Getzlaff, Klaus Schmidt, Christina Biastoch, Arne Hentschel, Ute 2020 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.923271 https://doi.pangaea.de/10.1594/PANGAEA.923271 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://dx.doi.org/10.1016/j.dsr.2020.103427 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY amplicon sequencing flow cytometry population genetics Porifera single-nucleotide polymorphisms SNPs Event label Sample code/label Sample ID Date/Time of event Latitude of event Longitude of event DEPTH, water Method/Device of event Area/locality Geology, comment Accession number, genetics Measurement conducted Bacteria Phytoplankton Dredge, rock CTD/Rosette Flow cytometry SponGES_0617 Angeles Alvarino Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES dataset Dataset 2020 ftdatacite https://doi.org/10.1594/pangaea.923271 https://doi.org/10.1016/j.dsr.2020.103427 2022-02-08T16:24:46Z Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the 'Topsentia-and-Petromica (TaP)' clade) at three locations in the Cantabrian Sea. Sponge taxonomy was assessed by spicule analyses, as well as by 18S sequencing and COI sequencing. The corresponding host microbiome was analysed by 16S rRNA gene sequencing. In addition we set up an oceanographic modelling framework, for which we used seawater flow cytometry data (derived from bottom depths of CTD casts) as ground-truthing data. Dataset North Atlantic DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
amplicon sequencing flow cytometry population genetics Porifera single-nucleotide polymorphisms SNPs Event label Sample code/label Sample ID Date/Time of event Latitude of event Longitude of event DEPTH, water Method/Device of event Area/locality Geology, comment Accession number, genetics Measurement conducted Bacteria Phytoplankton Dredge, rock CTD/Rosette Flow cytometry SponGES_0617 Angeles Alvarino Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES |
spellingShingle |
amplicon sequencing flow cytometry population genetics Porifera single-nucleotide polymorphisms SNPs Event label Sample code/label Sample ID Date/Time of event Latitude of event Longitude of event DEPTH, water Method/Device of event Area/locality Geology, comment Accession number, genetics Measurement conducted Bacteria Phytoplankton Dredge, rock CTD/Rosette Flow cytometry SponGES_0617 Angeles Alvarino Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES Busch, Kathrin Taboada, Sergi Riesgo, Ana Koutsouveli, Vasiliki Rios, Pilar Cristobo, Javier Franke, Andre Getzlaff, Klaus Schmidt, Christina Biastoch, Arne Hentschel, Ute Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
topic_facet |
amplicon sequencing flow cytometry population genetics Porifera single-nucleotide polymorphisms SNPs Event label Sample code/label Sample ID Date/Time of event Latitude of event Longitude of event DEPTH, water Method/Device of event Area/locality Geology, comment Accession number, genetics Measurement conducted Bacteria Phytoplankton Dredge, rock CTD/Rosette Flow cytometry SponGES_0617 Angeles Alvarino Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES |
description |
Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the 'Topsentia-and-Petromica (TaP)' clade) at three locations in the Cantabrian Sea. Sponge taxonomy was assessed by spicule analyses, as well as by 18S sequencing and COI sequencing. The corresponding host microbiome was analysed by 16S rRNA gene sequencing. In addition we set up an oceanographic modelling framework, for which we used seawater flow cytometry data (derived from bottom depths of CTD casts) as ground-truthing data. |
format |
Dataset |
author |
Busch, Kathrin Taboada, Sergi Riesgo, Ana Koutsouveli, Vasiliki Rios, Pilar Cristobo, Javier Franke, Andre Getzlaff, Klaus Schmidt, Christina Biastoch, Arne Hentschel, Ute |
author_facet |
Busch, Kathrin Taboada, Sergi Riesgo, Ana Koutsouveli, Vasiliki Rios, Pilar Cristobo, Javier Franke, Andre Getzlaff, Klaus Schmidt, Christina Biastoch, Arne Hentschel, Ute |
author_sort |
Busch, Kathrin |
title |
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
title_short |
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
title_full |
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
title_fullStr |
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
title_full_unstemmed |
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 |
title_sort |
metadata, flow cytometry data, and ncbi-accession numbers (16s, 18s, coi, and snp data) for fan-shaped sponges and seawater from the cantabrian sea in summer 2017 |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2020 |
url |
https://dx.doi.org/10.1594/pangaea.923271 https://doi.pangaea.de/10.1594/PANGAEA.923271 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_relation |
https://dx.doi.org/10.1016/j.dsr.2020.103427 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.923271 https://doi.org/10.1016/j.dsr.2020.103427 |
_version_ |
1766131352945557504 |