Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017

Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the '...

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Main Authors: Busch, Kathrin, Taboada, Sergi, Riesgo, Ana, Koutsouveli, Vasiliki, Rios, Pilar, Cristobo, Javier, Franke, Andre, Getzlaff, Klaus, Schmidt, Christina, Biastoch, Arne, Hentschel, Ute
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2020
Subjects:
Online Access:https://dx.doi.org/10.1594/pangaea.923271
https://doi.pangaea.de/10.1594/PANGAEA.923271
id ftdatacite:10.1594/pangaea.923271
record_format openpolar
spelling ftdatacite:10.1594/pangaea.923271 2023-05-15T17:33:00+02:00 Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017 Busch, Kathrin Taboada, Sergi Riesgo, Ana Koutsouveli, Vasiliki Rios, Pilar Cristobo, Javier Franke, Andre Getzlaff, Klaus Schmidt, Christina Biastoch, Arne Hentschel, Ute 2020 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.923271 https://doi.pangaea.de/10.1594/PANGAEA.923271 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://dx.doi.org/10.1016/j.dsr.2020.103427 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY amplicon sequencing flow cytometry population genetics Porifera single-nucleotide polymorphisms SNPs Event label Sample code/label Sample ID Date/Time of event Latitude of event Longitude of event DEPTH, water Method/Device of event Area/locality Geology, comment Accession number, genetics Measurement conducted Bacteria Phytoplankton Dredge, rock CTD/Rosette Flow cytometry SponGES_0617 Angeles Alvarino Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES dataset Dataset 2020 ftdatacite https://doi.org/10.1594/pangaea.923271 https://doi.org/10.1016/j.dsr.2020.103427 2022-02-08T16:24:46Z Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the 'Topsentia-and-Petromica (TaP)' clade) at three locations in the Cantabrian Sea. Sponge taxonomy was assessed by spicule analyses, as well as by 18S sequencing and COI sequencing. The corresponding host microbiome was analysed by 16S rRNA gene sequencing. In addition we set up an oceanographic modelling framework, for which we used seawater flow cytometry data (derived from bottom depths of CTD casts) as ground-truthing data. Dataset North Atlantic DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic amplicon sequencing
flow cytometry
population genetics
Porifera
single-nucleotide polymorphisms SNPs
Event label
Sample code/label
Sample ID
Date/Time of event
Latitude of event
Longitude of event
DEPTH, water
Method/Device of event
Area/locality
Geology, comment
Accession number, genetics
Measurement conducted
Bacteria
Phytoplankton
Dredge, rock
CTD/Rosette
Flow cytometry
SponGES_0617
Angeles Alvarino
Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES
spellingShingle amplicon sequencing
flow cytometry
population genetics
Porifera
single-nucleotide polymorphisms SNPs
Event label
Sample code/label
Sample ID
Date/Time of event
Latitude of event
Longitude of event
DEPTH, water
Method/Device of event
Area/locality
Geology, comment
Accession number, genetics
Measurement conducted
Bacteria
Phytoplankton
Dredge, rock
CTD/Rosette
Flow cytometry
SponGES_0617
Angeles Alvarino
Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES
Busch, Kathrin
Taboada, Sergi
Riesgo, Ana
Koutsouveli, Vasiliki
Rios, Pilar
Cristobo, Javier
Franke, Andre
Getzlaff, Klaus
Schmidt, Christina
Biastoch, Arne
Hentschel, Ute
Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
topic_facet amplicon sequencing
flow cytometry
population genetics
Porifera
single-nucleotide polymorphisms SNPs
Event label
Sample code/label
Sample ID
Date/Time of event
Latitude of event
Longitude of event
DEPTH, water
Method/Device of event
Area/locality
Geology, comment
Accession number, genetics
Measurement conducted
Bacteria
Phytoplankton
Dredge, rock
CTD/Rosette
Flow cytometry
SponGES_0617
Angeles Alvarino
Deep-sea Sponge Grounds Ecosystems of the North Atlantic SponGES
description Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the 'Topsentia-and-Petromica (TaP)' clade) at three locations in the Cantabrian Sea. Sponge taxonomy was assessed by spicule analyses, as well as by 18S sequencing and COI sequencing. The corresponding host microbiome was analysed by 16S rRNA gene sequencing. In addition we set up an oceanographic modelling framework, for which we used seawater flow cytometry data (derived from bottom depths of CTD casts) as ground-truthing data.
format Dataset
author Busch, Kathrin
Taboada, Sergi
Riesgo, Ana
Koutsouveli, Vasiliki
Rios, Pilar
Cristobo, Javier
Franke, Andre
Getzlaff, Klaus
Schmidt, Christina
Biastoch, Arne
Hentschel, Ute
author_facet Busch, Kathrin
Taboada, Sergi
Riesgo, Ana
Koutsouveli, Vasiliki
Rios, Pilar
Cristobo, Javier
Franke, Andre
Getzlaff, Klaus
Schmidt, Christina
Biastoch, Arne
Hentschel, Ute
author_sort Busch, Kathrin
title Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
title_short Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
title_full Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
title_fullStr Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
title_full_unstemmed Metadata, flow cytometry data, and NCBI-Accession numbers (16S, 18S, COI, and SNP data) for fan-shaped sponges and seawater from the Cantabrian Sea in summer 2017
title_sort metadata, flow cytometry data, and ncbi-accession numbers (16s, 18s, coi, and snp data) for fan-shaped sponges and seawater from the cantabrian sea in summer 2017
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2020
url https://dx.doi.org/10.1594/pangaea.923271
https://doi.pangaea.de/10.1594/PANGAEA.923271
genre North Atlantic
genre_facet North Atlantic
op_relation https://dx.doi.org/10.1016/j.dsr.2020.103427
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.923271
https://doi.org/10.1016/j.dsr.2020.103427
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