Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...

To understand the response of marine calcifying organisms under high CO2 scenarios, it is critical to study their calcification patterns in the natural environment. This paper focuses on a major calcifying phytoplankton group, the coccolithophores, through the analysis of water samples collected alo...

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Bibliographic Details
Main Authors: D'Amario, Barbara, Ziveri, Patrizia, Grelaud, Michaël, Oviedo, Angela Maria
Format: Dataset
Language:English
Published: PANGAEA 2018
Subjects:
pH
CTD
Online Access:https://dx.doi.org/10.1594/pangaea.914922
https://doi.pangaea.de/10.1594/PANGAEA.914922
id ftdatacite:10.1594/pangaea.914922
record_format openpolar
spelling ftdatacite:10.1594/pangaea.914922 2023-05-15T17:51:17+02:00 Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ... D'Amario, Barbara Ziveri, Patrizia Grelaud, Michaël Oviedo, Angela Maria 2018 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.914922 https://doi.pangaea.de/10.1594/PANGAEA.914922 en eng PANGAEA https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1371/journal.pone.0201161 https://dx.doi.org/10.1594/pangaea.856648 https://dx.doi.org/10.1594/pangaea.885694 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Chromista Coast and continental shelf Emiliania huxleyi Field observation Growth/Morphology Haptophyta Mediterranean Sea Pelagos Phytoplankton Single species Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference LATITUDE LONGITUDE ELEVATION Station label Bottle number DATE/TIME DEPTH, water Pressure, water Temperature, water Salinity Nitrate and Nitrite Phosphate Oxygen pH Partial pressure of carbon dioxide water at sea surface temperature wet air Carbonate ion Alkalinity, total Radiation, photosynthetically active Fluorescence, chlorophyll Percentage Coccoliths, mass Coccoliths, length Calcification index Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state CTD/Rosette CTD Nutrient autoanalyzer Bran and Luebbe, AAIII Oxygen sensor, SBE 43 dataset Dataset 2018 ftdatacite https://doi.org/10.1594/pangaea.91492210.1371/journal.pone.020116110.1594/pangaea.85664810.1594/pangaea.885694 2023-04-03T13:11:41Z To understand the response of marine calcifying organisms under high CO2 scenarios, it is critical to study their calcification patterns in the natural environment. This paper focuses on a major calcifying phytoplankton group, the coccolithophores, through the analysis of water samples collected along a W-E Mediterranean transect during two research cruises, in April 2011 (Meteor cruise M84/3) and May 2013 (MedSeA cruise 2013). The Mediterranean Sea is a marginal sea characterized by large biogeochemical gradients. Currently, it is undergoing both warming and ocean acidification, processes which are rapidly modifying species distribution and calcification. The species Emiliania huxleyi largely dominates the total coccolithophore production in present day oceans and marine basins, including the Mediterranean Sea. A series of morphometric measurements were performed on the coccoliths of this species to estimate their mass, length and calculate a calcification index (proxy for the size-normalized calcification ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-16.Coccolith mass: for each sample, mass measurements were done with SYRACO (Beaufort and Dollfus, 2004; doi:10.1016/j.marmicro.2003.09.003) on at least 100 - 300 coccoliths and then averagedCoccolith length: for each sample, length measurements were done with SYRACO (Beaufort and Dollfus, 2004; doi:10.1016/j.marmicro.2003.09.003) on at least 100 - 300 coccoliths and then averagedCoccolith, corrected length: averaged coccolith lengths obtained from SYRACO where converted into Lc using the formula: Lc = (0.585 x coccolith length from SYRACO) + 0.4537Calcification index: Ci=Ms/Mn); Mn=coccolith ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Chromista
Coast and continental shelf
Emiliania huxleyi
Field observation
Growth/Morphology
Haptophyta
Mediterranean Sea
Pelagos
Phytoplankton
Single species
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
LATITUDE
LONGITUDE
ELEVATION
Station label
Bottle number
DATE/TIME
DEPTH, water
Pressure, water
Temperature, water
Salinity
Nitrate and Nitrite
Phosphate
Oxygen
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate ion
Alkalinity, total
Radiation, photosynthetically active
Fluorescence, chlorophyll
Percentage
Coccoliths, mass
Coccoliths, length
Calcification index
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
CTD/Rosette
CTD
Nutrient autoanalyzer Bran and Luebbe, AAIII
Oxygen sensor, SBE 43
spellingShingle Chromista
Coast and continental shelf
Emiliania huxleyi
Field observation
Growth/Morphology
Haptophyta
Mediterranean Sea
Pelagos
Phytoplankton
Single species
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
LATITUDE
LONGITUDE
ELEVATION
Station label
Bottle number
DATE/TIME
DEPTH, water
Pressure, water
Temperature, water
Salinity
Nitrate and Nitrite
Phosphate
Oxygen
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate ion
Alkalinity, total
Radiation, photosynthetically active
Fluorescence, chlorophyll
Percentage
Coccoliths, mass
Coccoliths, length
Calcification index
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
CTD/Rosette
CTD
Nutrient autoanalyzer Bran and Luebbe, AAIII
Oxygen sensor, SBE 43
D'Amario, Barbara
Ziveri, Patrizia
Grelaud, Michaël
Oviedo, Angela Maria
Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
topic_facet Chromista
Coast and continental shelf
Emiliania huxleyi
Field observation
Growth/Morphology
Haptophyta
Mediterranean Sea
Pelagos
Phytoplankton
Single species
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
LATITUDE
LONGITUDE
ELEVATION
Station label
Bottle number
DATE/TIME
DEPTH, water
Pressure, water
Temperature, water
Salinity
Nitrate and Nitrite
Phosphate
Oxygen
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate ion
Alkalinity, total
Radiation, photosynthetically active
Fluorescence, chlorophyll
Percentage
Coccoliths, mass
Coccoliths, length
Calcification index
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
CTD/Rosette
CTD
Nutrient autoanalyzer Bran and Luebbe, AAIII
Oxygen sensor, SBE 43
description To understand the response of marine calcifying organisms under high CO2 scenarios, it is critical to study their calcification patterns in the natural environment. This paper focuses on a major calcifying phytoplankton group, the coccolithophores, through the analysis of water samples collected along a W-E Mediterranean transect during two research cruises, in April 2011 (Meteor cruise M84/3) and May 2013 (MedSeA cruise 2013). The Mediterranean Sea is a marginal sea characterized by large biogeochemical gradients. Currently, it is undergoing both warming and ocean acidification, processes which are rapidly modifying species distribution and calcification. The species Emiliania huxleyi largely dominates the total coccolithophore production in present day oceans and marine basins, including the Mediterranean Sea. A series of morphometric measurements were performed on the coccoliths of this species to estimate their mass, length and calculate a calcification index (proxy for the size-normalized calcification ... : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-04-16.Coccolith mass: for each sample, mass measurements were done with SYRACO (Beaufort and Dollfus, 2004; doi:10.1016/j.marmicro.2003.09.003) on at least 100 - 300 coccoliths and then averagedCoccolith length: for each sample, length measurements were done with SYRACO (Beaufort and Dollfus, 2004; doi:10.1016/j.marmicro.2003.09.003) on at least 100 - 300 coccoliths and then averagedCoccolith, corrected length: averaged coccolith lengths obtained from SYRACO where converted into Lc using the formula: Lc = (0.585 x coccolith length from SYRACO) + 0.4537Calcification index: Ci=Ms/Mn); Mn=coccolith ...
format Dataset
author D'Amario, Barbara
Ziveri, Patrizia
Grelaud, Michaël
Oviedo, Angela Maria
author_facet D'Amario, Barbara
Ziveri, Patrizia
Grelaud, Michaël
Oviedo, Angela Maria
author_sort D'Amario, Barbara
title Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
title_short Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
title_full Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
title_fullStr Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
title_full_unstemmed Seawater carbonate chemistry and coccolith calcite mass of Emiliania huxleyi ...
title_sort seawater carbonate chemistry and coccolith calcite mass of emiliania huxleyi ...
publisher PANGAEA
publishDate 2018
url https://dx.doi.org/10.1594/pangaea.914922
https://doi.pangaea.de/10.1594/PANGAEA.914922
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://CRAN.R-project.org/package=seacarb
https://dx.doi.org/10.1371/journal.pone.0201161
https://dx.doi.org/10.1594/pangaea.856648
https://dx.doi.org/10.1594/pangaea.885694
https://CRAN.R-project.org/package=seacarb
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.1594/pangaea.91492210.1371/journal.pone.020116110.1594/pangaea.85664810.1594/pangaea.885694
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