Seawater carbonate chemistry and diatom silica production in the Southern Ocean

Diatoms, large bloom-forming marine microorganisms, build frustules out of silicate, which ballasts the cells and aids their export to the deep ocean. This unique physiology forges an important link between the marine silicon and carbon cycles. However, the effect of ocean acidification on the silic...

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Main Authors: Petrou, Katherina, Baker, Kirralee G, Nielsen, Daniel A, Hancock, Alyce M, Schulz, Kai Georg, Davidson, Andrew T
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2019
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.914329
https://doi.pangaea.de/10.1594/PANGAEA.914329
id ftdatacite:10.1594/pangaea.914329
record_format openpolar
spelling ftdatacite:10.1594/pangaea.914329 2023-05-15T13:52:56+02:00 Seawater carbonate chemistry and diatom silica production in the Southern Ocean Petrou, Katherina Baker, Kirralee G Nielsen, Daniel A Hancock, Alyce M Schulz, Kai Georg Davidson, Andrew T 2019 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.914329 https://doi.pangaea.de/10.1594/PANGAEA.914329 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1038/s41558-019-0557-y https://dx.doi.org/10.26179/5c3e745a9b071 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Antarctic Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Entire community Fragilariopsis curta Fragilariopsis cylindrus Laboratory experiment Other metabolic rates Pelagos Polar Primary production/Photosynthesis Proboscia truncata Pseudonitzschia turgiduloides Stellarima microtrias Thalassiosira antarctica Type Species Abbreviation Registration number of species Uniform resource locator/link to reference Identification Replicate Biogenic silica Maximum photochemical quantum yield of photosystem II Experiment day Number of cells Silicification Chlorophyll a Cell biovolume Fugacity of carbon dioxide water at sea surface temperature wet air pH Proton concentration Temperature, water Salinity Nitrate and Nitrite Phosphorus, reactive soluble Silicate Carbon, inorganic, dissolved Alkalinity, total Carbonate system computation flag Carbon dioxide Partial pressure of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2019 ftdatacite https://doi.org/10.1594/pangaea.914329 https://doi.org/10.1038/s41558-019-0557-y https://doi.org/10.26179/5c3e745a9b071 2021-11-05T12:55:41Z Diatoms, large bloom-forming marine microorganisms, build frustules out of silicate, which ballasts the cells and aids their export to the deep ocean. This unique physiology forges an important link between the marine silicon and carbon cycles. However, the effect of ocean acidification on the silicification of diatoms is unclear. Here we show that diatom silicification strongly diminishes with increased acidity in a natural Antarctic community. Analyses of single cells from within the community reveal that the effect of reduced pH on silicification differs among taxa, with several species having significantly reduced silica incorporation at CO2 levels equivalent to those projected for 2100. These findings suggest that, before the end of this century, ocean acidification may influence the carbon and silicon cycle by both altering the composition of the diatom assemblages and reducing cell ballasting, which will probably alter vertical flux of these elements to the deep ocean. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18. Dataset Antarc* Antarctic Antarctica Ocean acidification Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) Antarctic Southern Ocean
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Antarctic
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Entire community
Fragilariopsis curta
Fragilariopsis cylindrus
Laboratory experiment
Other metabolic rates
Pelagos
Polar
Primary production/Photosynthesis
Proboscia truncata
Pseudonitzschia turgiduloides
Stellarima microtrias
Thalassiosira antarctica
Type
Species
Abbreviation
Registration number of species
Uniform resource locator/link to reference
Identification
Replicate
Biogenic silica
Maximum photochemical quantum yield of photosystem II
Experiment day
Number of cells
Silicification
Chlorophyll a
Cell biovolume
Fugacity of carbon dioxide water at sea surface temperature wet air
pH
Proton concentration
Temperature, water
Salinity
Nitrate and Nitrite
Phosphorus, reactive soluble
Silicate
Carbon, inorganic, dissolved
Alkalinity, total
Carbonate system computation flag
Carbon dioxide
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Antarctic
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Entire community
Fragilariopsis curta
Fragilariopsis cylindrus
Laboratory experiment
Other metabolic rates
Pelagos
Polar
Primary production/Photosynthesis
Proboscia truncata
Pseudonitzschia turgiduloides
Stellarima microtrias
Thalassiosira antarctica
Type
Species
Abbreviation
Registration number of species
Uniform resource locator/link to reference
Identification
Replicate
Biogenic silica
Maximum photochemical quantum yield of photosystem II
Experiment day
Number of cells
Silicification
Chlorophyll a
Cell biovolume
Fugacity of carbon dioxide water at sea surface temperature wet air
pH
Proton concentration
Temperature, water
Salinity
Nitrate and Nitrite
Phosphorus, reactive soluble
Silicate
Carbon, inorganic, dissolved
Alkalinity, total
Carbonate system computation flag
Carbon dioxide
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Petrou, Katherina
Baker, Kirralee G
Nielsen, Daniel A
Hancock, Alyce M
Schulz, Kai Georg
Davidson, Andrew T
Seawater carbonate chemistry and diatom silica production in the Southern Ocean
topic_facet Antarctic
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Entire community
Fragilariopsis curta
Fragilariopsis cylindrus
Laboratory experiment
Other metabolic rates
Pelagos
Polar
Primary production/Photosynthesis
Proboscia truncata
Pseudonitzschia turgiduloides
Stellarima microtrias
Thalassiosira antarctica
Type
Species
Abbreviation
Registration number of species
Uniform resource locator/link to reference
Identification
Replicate
Biogenic silica
Maximum photochemical quantum yield of photosystem II
Experiment day
Number of cells
Silicification
Chlorophyll a
Cell biovolume
Fugacity of carbon dioxide water at sea surface temperature wet air
pH
Proton concentration
Temperature, water
Salinity
Nitrate and Nitrite
Phosphorus, reactive soluble
Silicate
Carbon, inorganic, dissolved
Alkalinity, total
Carbonate system computation flag
Carbon dioxide
Partial pressure of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Diatoms, large bloom-forming marine microorganisms, build frustules out of silicate, which ballasts the cells and aids their export to the deep ocean. This unique physiology forges an important link between the marine silicon and carbon cycles. However, the effect of ocean acidification on the silicification of diatoms is unclear. Here we show that diatom silicification strongly diminishes with increased acidity in a natural Antarctic community. Analyses of single cells from within the community reveal that the effect of reduced pH on silicification differs among taxa, with several species having significantly reduced silica incorporation at CO2 levels equivalent to those projected for 2100. These findings suggest that, before the end of this century, ocean acidification may influence the carbon and silicon cycle by both altering the composition of the diatom assemblages and reducing cell ballasting, which will probably alter vertical flux of these elements to the deep ocean. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
format Dataset
author Petrou, Katherina
Baker, Kirralee G
Nielsen, Daniel A
Hancock, Alyce M
Schulz, Kai Georg
Davidson, Andrew T
author_facet Petrou, Katherina
Baker, Kirralee G
Nielsen, Daniel A
Hancock, Alyce M
Schulz, Kai Georg
Davidson, Andrew T
author_sort Petrou, Katherina
title Seawater carbonate chemistry and diatom silica production in the Southern Ocean
title_short Seawater carbonate chemistry and diatom silica production in the Southern Ocean
title_full Seawater carbonate chemistry and diatom silica production in the Southern Ocean
title_fullStr Seawater carbonate chemistry and diatom silica production in the Southern Ocean
title_full_unstemmed Seawater carbonate chemistry and diatom silica production in the Southern Ocean
title_sort seawater carbonate chemistry and diatom silica production in the southern ocean
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2019
url https://dx.doi.org/10.1594/pangaea.914329
https://doi.pangaea.de/10.1594/PANGAEA.914329
geographic Antarctic
Southern Ocean
geographic_facet Antarctic
Southern Ocean
genre Antarc*
Antarctic
Antarctica
Ocean acidification
Southern Ocean
genre_facet Antarc*
Antarctic
Antarctica
Ocean acidification
Southern Ocean
op_relation https://CRAN.R-project.org/package=seacarb
https://dx.doi.org/10.1038/s41558-019-0557-y
https://dx.doi.org/10.26179/5c3e745a9b071
https://CRAN.R-project.org/package=seacarb
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.914329
https://doi.org/10.1038/s41558-019-0557-y
https://doi.org/10.26179/5c3e745a9b071
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