Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was...
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PANGAEA - Data Publisher for Earth & Environmental Science
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Online Access: | https://dx.doi.org/10.1594/pangaea.913398 https://doi.pangaea.de/10.1594/PANGAEA.913398 |
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ftdatacite:10.1594/pangaea.913398 2023-05-15T17:51:12+02:00 Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton Coronado, Ismael Fine, Maoz Bosellini, Francesca R Stolarski, J 2019 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.913398 https://doi.pangaea.de/10.1594/PANGAEA.913398 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1038/s41467-019-10833-6 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Benthic animals Benthos Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Other studied parameter or process Red Sea Single species Stylophora pistillata Temperate Type Species Registration number of species Uniform resource locator/link to reference Experiment duration Treatment Area Greyscale value Greyscale values, standard deviation Chi-squared test, result Calcite, lattice parameter a Number Calcite, lattice parameter b Calcite, lattice parameter c Crystal lattice strain R-factor Cell volume Identification Crystallite size Crystallite size, standard deviation Percentage Percentage, standard deviation Temperature, water Weight loss pH Alkalinity, total Carbon, inorganic, dissolved Partial pressure of carbon dioxide water at sea surface temperature wet air Carbon dioxide Bicarbonate ion Carbonate ion Aragonite saturation state Salinity Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2019 ftdatacite https://doi.org/10.1594/pangaea.913398 https://doi.org/10.1038/s41467-019-10833-6 2021-11-05T12:55:41Z Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was shown in shifts in geochemical signatures. Herein, for the first time, we have assessed crystallographic parameters of bio-aragonite to study the response of the reef-building coral Stylophora pistillata to experimental seawater acidification (pH 8.2, 7.6 and 7.3). Skeletons formed under high pCO2 conditions show systematic crystallographic changes such as better constrained crystal orientation and anisotropic distortions of bio-aragonite lattice parameters due to increased amount of intracrystalline organic matrix and water content. These variations in crystallographic features that seem to reflect physiological adjustments of biomineralizing organisms to environmental change, are herein called crystallographic vital effect (CVE). CVE may register those changes in the biomineralization process that may not yet be perceived at the macromorphological skeletal level. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
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ftdatacite |
language |
English |
topic |
Animalia Benthic animals Benthos Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Other studied parameter or process Red Sea Single species Stylophora pistillata Temperate Type Species Registration number of species Uniform resource locator/link to reference Experiment duration Treatment Area Greyscale value Greyscale values, standard deviation Chi-squared test, result Calcite, lattice parameter a Number Calcite, lattice parameter b Calcite, lattice parameter c Crystal lattice strain R-factor Cell volume Identification Crystallite size Crystallite size, standard deviation Percentage Percentage, standard deviation Temperature, water Weight loss pH Alkalinity, total Carbon, inorganic, dissolved Partial pressure of carbon dioxide water at sea surface temperature wet air Carbon dioxide Bicarbonate ion Carbonate ion Aragonite saturation state Salinity Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Benthic animals Benthos Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Other studied parameter or process Red Sea Single species Stylophora pistillata Temperate Type Species Registration number of species Uniform resource locator/link to reference Experiment duration Treatment Area Greyscale value Greyscale values, standard deviation Chi-squared test, result Calcite, lattice parameter a Number Calcite, lattice parameter b Calcite, lattice parameter c Crystal lattice strain R-factor Cell volume Identification Crystallite size Crystallite size, standard deviation Percentage Percentage, standard deviation Temperature, water Weight loss pH Alkalinity, total Carbon, inorganic, dissolved Partial pressure of carbon dioxide water at sea surface temperature wet air Carbon dioxide Bicarbonate ion Carbonate ion Aragonite saturation state Salinity Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Coronado, Ismael Fine, Maoz Bosellini, Francesca R Stolarski, J Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
topic_facet |
Animalia Benthic animals Benthos Cnidaria Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Other studied parameter or process Red Sea Single species Stylophora pistillata Temperate Type Species Registration number of species Uniform resource locator/link to reference Experiment duration Treatment Area Greyscale value Greyscale values, standard deviation Chi-squared test, result Calcite, lattice parameter a Number Calcite, lattice parameter b Calcite, lattice parameter c Crystal lattice strain R-factor Cell volume Identification Crystallite size Crystallite size, standard deviation Percentage Percentage, standard deviation Temperature, water Weight loss pH Alkalinity, total Carbon, inorganic, dissolved Partial pressure of carbon dioxide water at sea surface temperature wet air Carbon dioxide Bicarbonate ion Carbonate ion Aragonite saturation state Salinity Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was shown in shifts in geochemical signatures. Herein, for the first time, we have assessed crystallographic parameters of bio-aragonite to study the response of the reef-building coral Stylophora pistillata to experimental seawater acidification (pH 8.2, 7.6 and 7.3). Skeletons formed under high pCO2 conditions show systematic crystallographic changes such as better constrained crystal orientation and anisotropic distortions of bio-aragonite lattice parameters due to increased amount of intracrystalline organic matrix and water content. These variations in crystallographic features that seem to reflect physiological adjustments of biomineralizing organisms to environmental change, are herein called crystallographic vital effect (CVE). CVE may register those changes in the biomineralization process that may not yet be perceived at the macromorphological skeletal level. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-06. |
format |
Dataset |
author |
Coronado, Ismael Fine, Maoz Bosellini, Francesca R Stolarski, J |
author_facet |
Coronado, Ismael Fine, Maoz Bosellini, Francesca R Stolarski, J |
author_sort |
Coronado, Ismael |
title |
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
title_short |
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
title_full |
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
title_fullStr |
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
title_full_unstemmed |
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
title_sort |
seawater carbonate chemistry and crystallographic vital effect of the coral skeleton |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2019 |
url |
https://dx.doi.org/10.1594/pangaea.913398 https://doi.pangaea.de/10.1594/PANGAEA.913398 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1038/s41467-019-10833-6 https://CRAN.R-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.913398 https://doi.org/10.1038/s41467-019-10833-6 |
_version_ |
1766158262264135680 |