Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115

Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effect...

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Bibliographic Details
Main Authors: Fitzer, Susan C, McGill, Rona A R, Torres Gabarda, Sergio, Hughes, Brian, Dove, Michael, O'Connor, Wayne A, Byrne, Maria
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2019
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.911619
https://doi.pangaea.de/10.1594/PANGAEA.911619
id ftdatacite:10.1594/pangaea.911619
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Animalia
Benthic animals
Benthos
Brackish waters
Estuary
Field observation
Mollusca
Other studied parameter or process
Saccostrea glomerata
Single species
South Pacific
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
Site
Description
Identification
Treatment
δ13C
Salinity
Temperature, water
pH
δ13C, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate ion
Calcite saturation state
Aragonite saturation state
Partial pressure of carbon dioxide water at sea surface temperature wet air
Chlorophyll a
Chlorophyll a, standard deviation
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard deviation
Oxygen, dissolved
Oxygen, dissolved, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Animalia
Benthic animals
Benthos
Brackish waters
Estuary
Field observation
Mollusca
Other studied parameter or process
Saccostrea glomerata
Single species
South Pacific
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
Site
Description
Identification
Treatment
δ13C
Salinity
Temperature, water
pH
δ13C, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate ion
Calcite saturation state
Aragonite saturation state
Partial pressure of carbon dioxide water at sea surface temperature wet air
Chlorophyll a
Chlorophyll a, standard deviation
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard deviation
Oxygen, dissolved
Oxygen, dissolved, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Fitzer, Susan C
McGill, Rona A R
Torres Gabarda, Sergio
Hughes, Brian
Dove, Michael
O'Connor, Wayne A
Byrne, Maria
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
topic_facet Animalia
Benthic animals
Benthos
Brackish waters
Estuary
Field observation
Mollusca
Other studied parameter or process
Saccostrea glomerata
Single species
South Pacific
Temperate
Event label
Type
Species
Registration number of species
Uniform resource locator/link to reference
Site
Description
Identification
Treatment
δ13C
Salinity
Temperature, water
pH
δ13C, standard deviation
Alkalinity, total
Alkalinity, total, standard deviation
Carbonate ion
Calcite saturation state
Aragonite saturation state
Partial pressure of carbon dioxide water at sea surface temperature wet air
Chlorophyll a
Chlorophyll a, standard deviation
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard deviation
Oxygen, dissolved
Oxygen, dissolved, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbon, inorganic, dissolved
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effects on biomineralization. We investigated shell biomineralization of selectively bred and wild‐type families of the Sydney rock oyster Saccostrea glomerata in a study of oysters being farmed in estuaries at aquaculture leases differing in environmental acidification. The contrasting estuarine pH regimes enabled us to determine the mechanisms of shell growth and the vulnerability of this species to contemporary environmental acidification. Determination of the source of carbon, the mechanism of carbon uptake and use of carbon in biomineral formation are key to understanding the vulnerability of shellfish aquaculture to contemporary and future environmental acidification. We, therefore, characterized the crystallography and carbon uptake in the shells of S. glomerata, resident in habitats subjected to coastal acidification, using high‐resolution electron backscatter diffraction and carbon isotope analyses (as δ13C). We show that oyster families selectively bred for fast growth and families selected for disease resistance can alter their mechanisms of calcite crystal biomineralization, promoting resilience to acidification. The responses of S. glomerata to acidification in their estuarine habitat provide key insights into mechanisms of mollusc shell growth under future climate change conditions. Importantly, we show that selective breeding in oysters is likely to be an important global mitigation strategy for sustainable shellfish aquaculture to withstand future climate‐driven change to habitat acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-03.
format Dataset
author Fitzer, Susan C
McGill, Rona A R
Torres Gabarda, Sergio
Hughes, Brian
Dove, Michael
O'Connor, Wayne A
Byrne, Maria
author_facet Fitzer, Susan C
McGill, Rona A R
Torres Gabarda, Sergio
Hughes, Brian
Dove, Michael
O'Connor, Wayne A
Byrne, Maria
author_sort Fitzer, Susan C
title Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
title_short Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
title_full Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
title_fullStr Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
title_full_unstemmed Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
title_sort seawater carbonate chemistry and crystallography and carbon uptake in the shells of saccostrea glomerata, supplement to: fitzer, susan c; mcgill, rona a r; torres gabarda, sergio; hughes, brian; dove, michael; o'connor, wayne a; byrne, maria (2019): selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. global change biology, 25(12), 4105-4115
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2019
url https://dx.doi.org/10.1594/pangaea.911619
https://doi.pangaea.de/10.1594/PANGAEA.911619
long_lat ENVELOPE(-58.383,-58.383,-62.067,-62.067)
ENVELOPE(13.943,13.943,66.985,66.985)
geographic O'Connor
Pacific
Rona
geographic_facet O'Connor
Pacific
Rona
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://CRAN.R-project.org/package=seacarb
https://dx.doi.org/10.1111/gcb.14818
https://CRAN.R-project.org/package=seacarb
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.911619
https://doi.org/10.1111/gcb.14818
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spelling ftdatacite:10.1594/pangaea.911619 2023-05-15T17:51:02+02:00 Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 Fitzer, Susan C McGill, Rona A R Torres Gabarda, Sergio Hughes, Brian Dove, Michael O'Connor, Wayne A Byrne, Maria 2019 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.911619 https://doi.pangaea.de/10.1594/PANGAEA.911619 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1111/gcb.14818 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Benthic animals Benthos Brackish waters Estuary Field observation Mollusca Other studied parameter or process Saccostrea glomerata Single species South Pacific Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference Site Description Identification Treatment δ13C Salinity Temperature, water pH δ13C, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate ion Calcite saturation state Aragonite saturation state Partial pressure of carbon dioxide water at sea surface temperature wet air Chlorophyll a Chlorophyll a, standard deviation Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard deviation Oxygen, dissolved Oxygen, dissolved, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2019 ftdatacite https://doi.org/10.1594/pangaea.911619 https://doi.org/10.1111/gcb.14818 2021-11-05T12:55:41Z Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effects on biomineralization. We investigated shell biomineralization of selectively bred and wild‐type families of the Sydney rock oyster Saccostrea glomerata in a study of oysters being farmed in estuaries at aquaculture leases differing in environmental acidification. The contrasting estuarine pH regimes enabled us to determine the mechanisms of shell growth and the vulnerability of this species to contemporary environmental acidification. Determination of the source of carbon, the mechanism of carbon uptake and use of carbon in biomineral formation are key to understanding the vulnerability of shellfish aquaculture to contemporary and future environmental acidification. We, therefore, characterized the crystallography and carbon uptake in the shells of S. glomerata, resident in habitats subjected to coastal acidification, using high‐resolution electron backscatter diffraction and carbon isotope analyses (as δ13C). We show that oyster families selectively bred for fast growth and families selected for disease resistance can alter their mechanisms of calcite crystal biomineralization, promoting resilience to acidification. The responses of S. glomerata to acidification in their estuarine habitat provide key insights into mechanisms of mollusc shell growth under future climate change conditions. Importantly, we show that selective breeding in oysters is likely to be an important global mitigation strategy for sustainable shellfish aquaculture to withstand future climate‐driven change to habitat acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-03. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) O'Connor ENVELOPE(-58.383,-58.383,-62.067,-62.067) Pacific Rona ENVELOPE(13.943,13.943,66.985,66.985)