Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115
Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effect...
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Format: | Dataset |
Language: | English |
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PANGAEA - Data Publisher for Earth & Environmental Science
2019
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Online Access: | https://dx.doi.org/10.1594/pangaea.911619 https://doi.pangaea.de/10.1594/PANGAEA.911619 |
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ftdatacite:10.1594/pangaea.911619 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Animalia Benthic animals Benthos Brackish waters Estuary Field observation Mollusca Other studied parameter or process Saccostrea glomerata Single species South Pacific Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference Site Description Identification Treatment δ13C Salinity Temperature, water pH δ13C, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate ion Calcite saturation state Aragonite saturation state Partial pressure of carbon dioxide water at sea surface temperature wet air Chlorophyll a Chlorophyll a, standard deviation Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard deviation Oxygen, dissolved Oxygen, dissolved, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Benthic animals Benthos Brackish waters Estuary Field observation Mollusca Other studied parameter or process Saccostrea glomerata Single species South Pacific Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference Site Description Identification Treatment δ13C Salinity Temperature, water pH δ13C, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate ion Calcite saturation state Aragonite saturation state Partial pressure of carbon dioxide water at sea surface temperature wet air Chlorophyll a Chlorophyll a, standard deviation Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard deviation Oxygen, dissolved Oxygen, dissolved, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Fitzer, Susan C McGill, Rona A R Torres Gabarda, Sergio Hughes, Brian Dove, Michael O'Connor, Wayne A Byrne, Maria Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
topic_facet |
Animalia Benthic animals Benthos Brackish waters Estuary Field observation Mollusca Other studied parameter or process Saccostrea glomerata Single species South Pacific Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference Site Description Identification Treatment δ13C Salinity Temperature, water pH δ13C, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate ion Calcite saturation state Aragonite saturation state Partial pressure of carbon dioxide water at sea surface temperature wet air Chlorophyll a Chlorophyll a, standard deviation Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard deviation Oxygen, dissolved Oxygen, dissolved, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effects on biomineralization. We investigated shell biomineralization of selectively bred and wild‐type families of the Sydney rock oyster Saccostrea glomerata in a study of oysters being farmed in estuaries at aquaculture leases differing in environmental acidification. The contrasting estuarine pH regimes enabled us to determine the mechanisms of shell growth and the vulnerability of this species to contemporary environmental acidification. Determination of the source of carbon, the mechanism of carbon uptake and use of carbon in biomineral formation are key to understanding the vulnerability of shellfish aquaculture to contemporary and future environmental acidification. We, therefore, characterized the crystallography and carbon uptake in the shells of S. glomerata, resident in habitats subjected to coastal acidification, using high‐resolution electron backscatter diffraction and carbon isotope analyses (as δ13C). We show that oyster families selectively bred for fast growth and families selected for disease resistance can alter their mechanisms of calcite crystal biomineralization, promoting resilience to acidification. The responses of S. glomerata to acidification in their estuarine habitat provide key insights into mechanisms of mollusc shell growth under future climate change conditions. Importantly, we show that selective breeding in oysters is likely to be an important global mitigation strategy for sustainable shellfish aquaculture to withstand future climate‐driven change to habitat acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-03. |
format |
Dataset |
author |
Fitzer, Susan C McGill, Rona A R Torres Gabarda, Sergio Hughes, Brian Dove, Michael O'Connor, Wayne A Byrne, Maria |
author_facet |
Fitzer, Susan C McGill, Rona A R Torres Gabarda, Sergio Hughes, Brian Dove, Michael O'Connor, Wayne A Byrne, Maria |
author_sort |
Fitzer, Susan C |
title |
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
title_short |
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
title_full |
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
title_fullStr |
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
title_full_unstemmed |
Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 |
title_sort |
seawater carbonate chemistry and crystallography and carbon uptake in the shells of saccostrea glomerata, supplement to: fitzer, susan c; mcgill, rona a r; torres gabarda, sergio; hughes, brian; dove, michael; o'connor, wayne a; byrne, maria (2019): selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. global change biology, 25(12), 4105-4115 |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2019 |
url |
https://dx.doi.org/10.1594/pangaea.911619 https://doi.pangaea.de/10.1594/PANGAEA.911619 |
long_lat |
ENVELOPE(-58.383,-58.383,-62.067,-62.067) ENVELOPE(13.943,13.943,66.985,66.985) |
geographic |
O'Connor Pacific Rona |
geographic_facet |
O'Connor Pacific Rona |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1111/gcb.14818 https://CRAN.R-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.911619 https://doi.org/10.1111/gcb.14818 |
_version_ |
1766158023432077312 |
spelling |
ftdatacite:10.1594/pangaea.911619 2023-05-15T17:51:02+02:00 Seawater carbonate chemistry and crystallography and carbon uptake in the shells of Saccostrea glomerata, supplement to: Fitzer, Susan C; McGill, Rona A R; Torres Gabarda, Sergio; Hughes, Brian; Dove, Michael; O'Connor, Wayne A; Byrne, Maria (2019): Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), 4105-4115 Fitzer, Susan C McGill, Rona A R Torres Gabarda, Sergio Hughes, Brian Dove, Michael O'Connor, Wayne A Byrne, Maria 2019 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.911619 https://doi.pangaea.de/10.1594/PANGAEA.911619 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1111/gcb.14818 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Benthic animals Benthos Brackish waters Estuary Field observation Mollusca Other studied parameter or process Saccostrea glomerata Single species South Pacific Temperate Event label Type Species Registration number of species Uniform resource locator/link to reference Site Description Identification Treatment δ13C Salinity Temperature, water pH δ13C, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate ion Calcite saturation state Aragonite saturation state Partial pressure of carbon dioxide water at sea surface temperature wet air Chlorophyll a Chlorophyll a, standard deviation Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard deviation Oxygen, dissolved Oxygen, dissolved, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbon, inorganic, dissolved Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2019 ftdatacite https://doi.org/10.1594/pangaea.911619 https://doi.org/10.1111/gcb.14818 2021-11-05T12:55:41Z Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO2) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effects on biomineralization. We investigated shell biomineralization of selectively bred and wild‐type families of the Sydney rock oyster Saccostrea glomerata in a study of oysters being farmed in estuaries at aquaculture leases differing in environmental acidification. The contrasting estuarine pH regimes enabled us to determine the mechanisms of shell growth and the vulnerability of this species to contemporary environmental acidification. Determination of the source of carbon, the mechanism of carbon uptake and use of carbon in biomineral formation are key to understanding the vulnerability of shellfish aquaculture to contemporary and future environmental acidification. We, therefore, characterized the crystallography and carbon uptake in the shells of S. glomerata, resident in habitats subjected to coastal acidification, using high‐resolution electron backscatter diffraction and carbon isotope analyses (as δ13C). We show that oyster families selectively bred for fast growth and families selected for disease resistance can alter their mechanisms of calcite crystal biomineralization, promoting resilience to acidification. The responses of S. glomerata to acidification in their estuarine habitat provide key insights into mechanisms of mollusc shell growth under future climate change conditions. Importantly, we show that selective breeding in oysters is likely to be an important global mitigation strategy for sustainable shellfish aquaculture to withstand future climate‐driven change to habitat acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-03. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) O'Connor ENVELOPE(-58.383,-58.383,-62.067,-62.067) Pacific Rona ENVELOPE(13.943,13.943,66.985,66.985) |