Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an ar...
Main Authors: | , , , , , , , |
---|---|
Format: | Dataset |
Language: | English |
Published: |
PANGAEA - Data Publisher for Earth & Environmental Science
2018
|
Subjects: | |
Online Access: | https://dx.doi.org/10.1594/pangaea.900280 https://doi.pangaea.de/10.1594/PANGAEA.900280 |
id |
ftdatacite:10.1594/pangaea.900280 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.1594/pangaea.900280 2023-05-15T17:50:37+02:00 Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 Lin, Xin Huang, Ruiping Li, Yan Li, Futian Wu, YaPing Hutchins, David A Dai, Minhan Gao, Kunshan 2018 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.900280 https://doi.pangaea.de/10.1594/PANGAEA.900280 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.5194/bg-15-551-2018 https://cran.r-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Coast and continental shelf Community composition and diversity Entire community Field experiment Mesocosm or benthocosm North Pacific Pelagos Temperate Type Phylum Treatment Abundance Class Order Family Genus Temperature, water Salinity Carbon, inorganic, dissolved pH Partial pressure of carbon dioxide water at sea surface temperature wet air Phosphate Silicate Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2018 ftdatacite https://doi.org/10.1594/pangaea.900280 https://doi.org/10.5194/bg-15-551-2018 2021-11-05T12:55:41Z There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Coast and continental shelf Community composition and diversity Entire community Field experiment Mesocosm or benthocosm North Pacific Pelagos Temperate Type Phylum Treatment Abundance Class Order Family Genus Temperature, water Salinity Carbon, inorganic, dissolved pH Partial pressure of carbon dioxide water at sea surface temperature wet air Phosphate Silicate Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Coast and continental shelf Community composition and diversity Entire community Field experiment Mesocosm or benthocosm North Pacific Pelagos Temperate Type Phylum Treatment Abundance Class Order Family Genus Temperature, water Salinity Carbon, inorganic, dissolved pH Partial pressure of carbon dioxide water at sea surface temperature wet air Phosphate Silicate Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Lin, Xin Huang, Ruiping Li, Yan Li, Futian Wu, YaPing Hutchins, David A Dai, Minhan Gao, Kunshan Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
topic_facet |
Coast and continental shelf Community composition and diversity Entire community Field experiment Mesocosm or benthocosm North Pacific Pelagos Temperate Type Phylum Treatment Abundance Class Order Family Genus Temperature, water Salinity Carbon, inorganic, dissolved pH Partial pressure of carbon dioxide water at sea surface temperature wet air Phosphate Silicate Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23. |
format |
Dataset |
author |
Lin, Xin Huang, Ruiping Li, Yan Li, Futian Wu, YaPing Hutchins, David A Dai, Minhan Gao, Kunshan |
author_facet |
Lin, Xin Huang, Ruiping Li, Yan Li, Futian Wu, YaPing Hutchins, David A Dai, Minhan Gao, Kunshan |
author_sort |
Lin, Xin |
title |
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
title_short |
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
title_full |
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
title_fullStr |
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
title_full_unstemmed |
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 |
title_sort |
seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: lin, xin; huang, ruiping; li, yan; li, futian; wu, yaping; hutchins, david a; dai, minhan; gao, kunshan (2018): interactive network configuration maintains bacterioplankton community structure under elevated co2 in a eutrophic coastal mesocosm experiment. biogeosciences, 15(2), 551-565 |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2018 |
url |
https://dx.doi.org/10.1594/pangaea.900280 https://doi.pangaea.de/10.1594/PANGAEA.900280 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://cran.r-project.org/package=seacarb https://dx.doi.org/10.5194/bg-15-551-2018 https://cran.r-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.900280 https://doi.org/10.5194/bg-15-551-2018 |
_version_ |
1766157448664580096 |