Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565

There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an ar...

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Main Authors: Lin, Xin, Huang, Ruiping, Li, Yan, Li, Futian, Wu, YaPing, Hutchins, David A, Dai, Minhan, Gao, Kunshan
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2018
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.900280
https://doi.pangaea.de/10.1594/PANGAEA.900280
id ftdatacite:10.1594/pangaea.900280
record_format openpolar
spelling ftdatacite:10.1594/pangaea.900280 2023-05-15T17:50:37+02:00 Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565 Lin, Xin Huang, Ruiping Li, Yan Li, Futian Wu, YaPing Hutchins, David A Dai, Minhan Gao, Kunshan 2018 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.900280 https://doi.pangaea.de/10.1594/PANGAEA.900280 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.5194/bg-15-551-2018 https://cran.r-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Coast and continental shelf Community composition and diversity Entire community Field experiment Mesocosm or benthocosm North Pacific Pelagos Temperate Type Phylum Treatment Abundance Class Order Family Genus Temperature, water Salinity Carbon, inorganic, dissolved pH Partial pressure of carbon dioxide water at sea surface temperature wet air Phosphate Silicate Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Alkalinity, total Aragonite saturation state Calcite saturation state Experiment Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2018 ftdatacite https://doi.org/10.1594/pangaea.900280 https://doi.org/10.5194/bg-15-551-2018 2021-11-05T12:55:41Z There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Pacific
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Coast and continental shelf
Community composition and diversity
Entire community
Field experiment
Mesocosm or benthocosm
North Pacific
Pelagos
Temperate
Type
Phylum
Treatment
Abundance
Class
Order
Family
Genus
Temperature, water
Salinity
Carbon, inorganic, dissolved
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Phosphate
Silicate
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Alkalinity, total
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Coast and continental shelf
Community composition and diversity
Entire community
Field experiment
Mesocosm or benthocosm
North Pacific
Pelagos
Temperate
Type
Phylum
Treatment
Abundance
Class
Order
Family
Genus
Temperature, water
Salinity
Carbon, inorganic, dissolved
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Phosphate
Silicate
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Alkalinity, total
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Lin, Xin
Huang, Ruiping
Li, Yan
Li, Futian
Wu, YaPing
Hutchins, David A
Dai, Minhan
Gao, Kunshan
Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
topic_facet Coast and continental shelf
Community composition and diversity
Entire community
Field experiment
Mesocosm or benthocosm
North Pacific
Pelagos
Temperate
Type
Phylum
Treatment
Abundance
Class
Order
Family
Genus
Temperature, water
Salinity
Carbon, inorganic, dissolved
pH
Partial pressure of carbon dioxide water at sea surface temperature wet air
Phosphate
Silicate
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Alkalinity, total
Aragonite saturation state
Calcite saturation state
Experiment
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
format Dataset
author Lin, Xin
Huang, Ruiping
Li, Yan
Li, Futian
Wu, YaPing
Hutchins, David A
Dai, Minhan
Gao, Kunshan
author_facet Lin, Xin
Huang, Ruiping
Li, Yan
Li, Futian
Wu, YaPing
Hutchins, David A
Dai, Minhan
Gao, Kunshan
author_sort Lin, Xin
title Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
title_short Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
title_full Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
title_fullStr Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
title_full_unstemmed Seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: Lin, Xin; Huang, Ruiping; Li, Yan; Li, Futian; Wu, YaPing; Hutchins, David A; Dai, Minhan; Gao, Kunshan (2018): Interactive network configuration maintains bacterioplankton community structure under elevated CO2 in a eutrophic coastal mesocosm experiment. Biogeosciences, 15(2), 551-565
title_sort seawater carbonate chemistry and bacterioplankton community structures in a eutrophic coastal mesocosm experiment, supplement to: lin, xin; huang, ruiping; li, yan; li, futian; wu, yaping; hutchins, david a; dai, minhan; gao, kunshan (2018): interactive network configuration maintains bacterioplankton community structure under elevated co2 in a eutrophic coastal mesocosm experiment. biogeosciences, 15(2), 551-565
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2018
url https://dx.doi.org/10.1594/pangaea.900280
https://doi.pangaea.de/10.1594/PANGAEA.900280
geographic Pacific
geographic_facet Pacific
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/package=seacarb
https://dx.doi.org/10.5194/bg-15-551-2018
https://cran.r-project.org/package=seacarb
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.900280
https://doi.org/10.5194/bg-15-551-2018
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