A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503

Most ocean acidification (OA) experimental systems rely on pH as an indirect way to control CO2. However, accurate pH measurements are difficult to obtain and shifts in temperature and/or salinity alter the relationship between pH and pCO2. Here we describe a system in which the target pCO2 is contr...

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Bibliographic Details
Main Authors: Sordo, Laura, Santos, Rui, Reis, Joao, Shulika, Alona, Silva, João
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2016
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.867506
https://doi.pangaea.de/10.1594/PANGAEA.867506
id ftdatacite:10.1594/pangaea.867506
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Benthos
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Macroalgae
North Atlantic
Phymatolithon lusitanicum
Plantae
Primary production/Photosynthesis
Respiration
Rhodophyta
Single species
Temperate
Temperature
Type
Species
Registration number of species
Uniform resource locator/link to reference
Partial pressure of carbon dioxide water at sea surface temperature wet air
Irradiance
Net photosynthesis rate, oxygen
Temperature, water
Respiration rate, oxygen
Respiration rate, oxygen, standard error
Alkalinity, total
Alkalinity, total, standard error
Salinity
Salinity, standard error
Temperature, water, standard error
pH
pH, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Calcite saturation state
Experiment
Potentiometric titration
Potentiometric
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Benthos
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Macroalgae
North Atlantic
Phymatolithon lusitanicum
Plantae
Primary production/Photosynthesis
Respiration
Rhodophyta
Single species
Temperate
Temperature
Type
Species
Registration number of species
Uniform resource locator/link to reference
Partial pressure of carbon dioxide water at sea surface temperature wet air
Irradiance
Net photosynthesis rate, oxygen
Temperature, water
Respiration rate, oxygen
Respiration rate, oxygen, standard error
Alkalinity, total
Alkalinity, total, standard error
Salinity
Salinity, standard error
Temperature, water, standard error
pH
pH, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Calcite saturation state
Experiment
Potentiometric titration
Potentiometric
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Sordo, Laura
Santos, Rui
Reis, Joao
Shulika, Alona
Silva, João
A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
topic_facet Benthos
Coast and continental shelf
Containers and aquaria 20-1000 L or < 1 m**2
Laboratory experiment
Macroalgae
North Atlantic
Phymatolithon lusitanicum
Plantae
Primary production/Photosynthesis
Respiration
Rhodophyta
Single species
Temperate
Temperature
Type
Species
Registration number of species
Uniform resource locator/link to reference
Partial pressure of carbon dioxide water at sea surface temperature wet air
Irradiance
Net photosynthesis rate, oxygen
Temperature, water
Respiration rate, oxygen
Respiration rate, oxygen, standard error
Alkalinity, total
Alkalinity, total, standard error
Salinity
Salinity, standard error
Temperature, water, standard error
pH
pH, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Aragonite saturation state
Aragonite saturation state, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Calcite saturation state
Experiment
Potentiometric titration
Potentiometric
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Most ocean acidification (OA) experimental systems rely on pH as an indirect way to control CO2. However, accurate pH measurements are difficult to obtain and shifts in temperature and/or salinity alter the relationship between pH and pCO2. Here we describe a system in which the target pCO2 is controlled via direct analysis of pCO2 in seawater. This direct type of control accommodates potential temperature and salinity shifts, as the target variable is directly measured instead of being estimated. Water in a header tank is permanently re-circulated through an air-water equilibrator. The equilibrated air is then routed to an infrared gas analyzer (IRGA) that measures pCO2 and conveys this value to a Proportional-Integral-Derivative (PID) controller. The controller commands a solenoid valve that opens and closes the CO2 flush that is bubbled into the header tank. This low-cost control system allows the maintenance of stabilized levels of pCO2 for extended periods of time ensuring accurate experimental conditions. This system was used to study the long term effect of OA on the coralline red algae Phymatolithon lusitanicum. We found that after 11 months of high CO2 exposure, photosynthesis increased with CO2 as opposed to respiration, which was positively affected by temperature. Results showed that this system is adequate to run long-term OA experiments and can be easily adapted to test other relevant variables simultaneously with CO2, such as temperature, irradiance and nutrients. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-03.
format Dataset
author Sordo, Laura
Santos, Rui
Reis, Joao
Shulika, Alona
Silva, João
author_facet Sordo, Laura
Santos, Rui
Reis, Joao
Shulika, Alona
Silva, João
author_sort Sordo, Laura
title A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
title_short A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
title_full A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
title_fullStr A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
title_full_unstemmed A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503
title_sort direct co2 control system for ocean acidification experiments: testing effects on the coralline red algae phymatolithon lusitanicum, supplement to: sordo, laura; santos, rui; reis, joao; shulika, alona; silva, joão (2016): a direct co2 control system for ocean acidification experiments: testing effects on the coralline red algae phymatolithon lusitanicum. peerj, 4, e2503
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2016
url https://dx.doi.org/10.1594/pangaea.867506
https://doi.pangaea.de/10.1594/PANGAEA.867506
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation https://cran.r-project.org/package=seacarb
https://dx.doi.org/10.7717/peerj.2503
https://cran.r-project.org/package=seacarb
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
CC-BY-3.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.867506
https://doi.org/10.7717/peerj.2503
_version_ 1766137283835068416
spelling ftdatacite:10.1594/pangaea.867506 2023-05-15T17:37:23+02:00 A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum, supplement to: Sordo, Laura; Santos, Rui; Reis, Joao; Shulika, Alona; Silva, João (2016): A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, 4, e2503 Sordo, Laura Santos, Rui Reis, Joao Shulika, Alona Silva, João 2016 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.867506 https://doi.pangaea.de/10.1594/PANGAEA.867506 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.7717/peerj.2503 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode CC-BY-3.0 CC-BY Benthos Coast and continental shelf Containers and aquaria 20-1000 L or < 1 m**2 Laboratory experiment Macroalgae North Atlantic Phymatolithon lusitanicum Plantae Primary production/Photosynthesis Respiration Rhodophyta Single species Temperate Temperature Type Species Registration number of species Uniform resource locator/link to reference Partial pressure of carbon dioxide water at sea surface temperature wet air Irradiance Net photosynthesis rate, oxygen Temperature, water Respiration rate, oxygen Respiration rate, oxygen, standard error Alkalinity, total Alkalinity, total, standard error Salinity Salinity, standard error Temperature, water, standard error pH pH, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Aragonite saturation state Aragonite saturation state, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Calcite saturation state Experiment Potentiometric titration Potentiometric Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2016 ftdatacite https://doi.org/10.1594/pangaea.867506 https://doi.org/10.7717/peerj.2503 2021-11-05T12:55:41Z Most ocean acidification (OA) experimental systems rely on pH as an indirect way to control CO2. However, accurate pH measurements are difficult to obtain and shifts in temperature and/or salinity alter the relationship between pH and pCO2. Here we describe a system in which the target pCO2 is controlled via direct analysis of pCO2 in seawater. This direct type of control accommodates potential temperature and salinity shifts, as the target variable is directly measured instead of being estimated. Water in a header tank is permanently re-circulated through an air-water equilibrator. The equilibrated air is then routed to an infrared gas analyzer (IRGA) that measures pCO2 and conveys this value to a Proportional-Integral-Derivative (PID) controller. The controller commands a solenoid valve that opens and closes the CO2 flush that is bubbled into the header tank. This low-cost control system allows the maintenance of stabilized levels of pCO2 for extended periods of time ensuring accurate experimental conditions. This system was used to study the long term effect of OA on the coralline red algae Phymatolithon lusitanicum. We found that after 11 months of high CO2 exposure, photosynthesis increased with CO2 as opposed to respiration, which was positively affected by temperature. Results showed that this system is adequate to run long-term OA experiments and can be easily adapted to test other relevant variables simultaneously with CO2, such as temperature, irradiance and nutrients. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-11-03. Dataset North Atlantic Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)