Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ...
The acidification of the oceans could potentially alter marine plankton communities with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidifications on communities using traditional methods, few have used genetic analyses. Here, we use community ba...
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ftdatacite:10.1594/pangaea.864598 2024-03-31T07:54:45+00:00 Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... Langer, Julia A F Sharma, Rahul Schmidt, Susanne I Bahrdt, Sebastian Horn, Henriette G Algueró-Muñiz, Maria Nam, Bora Achterberg, Eric Pieter Riebesell, Ulf Boersma, Maarten Thines, Marco Schwenk, Klaus 2016 application/zip https://dx.doi.org/10.1594/pangaea.864598 https://doi.pangaea.de/10.1594/PANGAEA.864598 en eng PANGAEA https://dx.doi.org/10.1371/journal.pone.0175808 Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 Biological sample Biological Impacts of Ocean Acidification BIOACID dataset Dataset Supplementary Dataset 2016 ftdatacite https://doi.org/10.1594/pangaea.86459810.1371/journal.pone.0175808 2024-03-04T13:37:27Z The acidification of the oceans could potentially alter marine plankton communities with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidifications on communities using traditional methods, few have used genetic analyses. Here, we use community barcoding to assess the impact of ocean acidification on the composition of a coastal plankton community in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta). Analyses based on predicted operational taxonomical units as well as taxonomical compositions revealed no differences between communities in high CO2 mesocosms (~760 µatm) and those exposed to present day CO2 conditions. Observed shifts in the planktonic community composition were mainly related to seasonal changes in temperature and nutrients. ... : Net (>200 µm <1 mm) and filter (>0.45 mm <200 µm) samples were taken from the mesocosms and the surrounding fjord.Mixed DNA samples were sequenced on an Illumina MiSeq platform using the paired end (2 x 300 bp) option.Pseudocalanus acuspes sequences were obtained by standard Sanger sequencing of the 18S and _cox_1 gene region.The allocation of OTUs (with assigned sequence reads) to the mesocosm and fjord samples can be found in the excel files. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Biological sample Biological Impacts of Ocean Acidification BIOACID |
spellingShingle |
Biological sample Biological Impacts of Ocean Acidification BIOACID Langer, Julia A F Sharma, Rahul Schmidt, Susanne I Bahrdt, Sebastian Horn, Henriette G Algueró-Muñiz, Maria Nam, Bora Achterberg, Eric Pieter Riebesell, Ulf Boersma, Maarten Thines, Marco Schwenk, Klaus Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
topic_facet |
Biological sample Biological Impacts of Ocean Acidification BIOACID |
description |
The acidification of the oceans could potentially alter marine plankton communities with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidifications on communities using traditional methods, few have used genetic analyses. Here, we use community barcoding to assess the impact of ocean acidification on the composition of a coastal plankton community in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta). Analyses based on predicted operational taxonomical units as well as taxonomical compositions revealed no differences between communities in high CO2 mesocosms (~760 µatm) and those exposed to present day CO2 conditions. Observed shifts in the planktonic community composition were mainly related to seasonal changes in temperature and nutrients. ... : Net (>200 µm <1 mm) and filter (>0.45 mm <200 µm) samples were taken from the mesocosms and the surrounding fjord.Mixed DNA samples were sequenced on an Illumina MiSeq platform using the paired end (2 x 300 bp) option.Pseudocalanus acuspes sequences were obtained by standard Sanger sequencing of the 18S and _cox_1 gene region.The allocation of OTUs (with assigned sequence reads) to the mesocosm and fjord samples can be found in the excel files. ... |
format |
Dataset |
author |
Langer, Julia A F Sharma, Rahul Schmidt, Susanne I Bahrdt, Sebastian Horn, Henriette G Algueró-Muñiz, Maria Nam, Bora Achterberg, Eric Pieter Riebesell, Ulf Boersma, Maarten Thines, Marco Schwenk, Klaus |
author_facet |
Langer, Julia A F Sharma, Rahul Schmidt, Susanne I Bahrdt, Sebastian Horn, Henriette G Algueró-Muñiz, Maria Nam, Bora Achterberg, Eric Pieter Riebesell, Ulf Boersma, Maarten Thines, Marco Schwenk, Klaus |
author_sort |
Langer, Julia A F |
title |
Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
title_short |
Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
title_full |
Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
title_fullStr |
Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
title_full_unstemmed |
Coastal plankton communities under elevated CO2: community barcoding results, link to data files in FASTA format ... |
title_sort |
coastal plankton communities under elevated co2: community barcoding results, link to data files in fasta format ... |
publisher |
PANGAEA |
publishDate |
2016 |
url |
https://dx.doi.org/10.1594/pangaea.864598 https://doi.pangaea.de/10.1594/PANGAEA.864598 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://dx.doi.org/10.1371/journal.pone.0175808 |
op_rights |
Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 |
op_doi |
https://doi.org/10.1594/pangaea.86459810.1371/journal.pone.0175808 |
_version_ |
1795035907450994688 |