Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...

Traditionally, many small-sized copepod species are considered to be widespread, bipolar or cosmopolitan. However, these large-scale distribution patterns need to be re-examined in view of increasing evidence of cryptic and pseudo-cryptic speciation in pelagic copepods. Here, we present a phylogeogr...

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Bibliographic Details
Main Authors: Cornils, Astrid, Wend-Heckmann, Britta, Held, Christoph
Format: Dataset
Language:English
Published: PANGAEA 2017
Subjects:
Online Access:https://dx.doi.org/10.1594/pangaea.862554
https://doi.pangaea.de/10.1594/PANGAEA.862554
id ftdatacite:10.1594/pangaea.862554
record_format openpolar
spelling ftdatacite:10.1594/pangaea.862554 2024-09-15T17:48:00+00:00 Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ... Cornils, Astrid Wend-Heckmann, Britta Held, Christoph 2017 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.862554 https://doi.pangaea.de/10.1594/PANGAEA.862554 en eng PANGAEA https://store.pangaea.de/Publications/Cornils-etal_2017_supplementary_material/Cornils-etal_2017_supplementary_material.zip https://dx.doi.org/10.1016/j.ympev.2016.12.019 https://store.pangaea.de/Publications/Cornils-etal_2017_supplementary_material/Cornils-etal_2017_supplementary_material.zip https://dx.doi.org/10.1007/s10152-015-0426-7 Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 LATITUDE LONGITUDE DATE/TIME Sequence identifier Sample code/label Species Investigator Area/locality Cruise/expedition Station label Depth, top/min Depth, bottom/max Accession number Prosome, length Urosome length Length, total Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 dataset Supplementary Dataset Dataset 2017 ftdatacite https://doi.org/10.1594/pangaea.86255410.1016/j.ympev.2016.12.01910.1007/s10152-015-0426-7 2024-08-01T10:56:44Z Traditionally, many small-sized copepod species are considered to be widespread, bipolar or cosmopolitan. However, these large-scale distribution patterns need to be re-examined in view of increasing evidence of cryptic and pseudo-cryptic speciation in pelagic copepods. Here, we present a phylogeographic study of Oithona similis s.l. populations from the Arctic Ocean, the Southern Ocean and its northern boundaries, the North Atlantic and the Mediterrranean Sea. O. similis s.l. is considered as one of the most abundant species in temperate to polar oceans and acts as an important link in the trophic network between the microbial loop and higher trophic levels such as fish larvae. Two gene fragments were analysed: the mitochondrial cytochrome oxidase c subunit I (COI), and the nuclear ribosomal 28 S genetic marker. Seven distinct, geographically delimitated, mitochondrial lineages could be identified, with divergences among the lineages ranging from 8 to 24%, thus representing most likely cryptic or ... : Supplement to: Cornils, Astrid; Wend-Heckmann, Britta; Held, Christoph (2017): Global phylogeography of Oithona similis s.l. (Crustacea, Copepoda, Oithonidae) – A cosmopolitan plankton species or a complex of cryptic lineages? Molecular Phylogenetics and Evolution, 107, 473-485 ... Dataset Antarc* Antarctic Arctic Ocean North Atlantic Sea ice Southern Ocean Copepods DataCite
institution Open Polar
collection DataCite
op_collection_id ftdatacite
language English
topic LATITUDE
LONGITUDE
DATE/TIME
Sequence identifier
Sample code/label
Species
Investigator
Area/locality
Cruise/expedition
Station label
Depth, top/min
Depth, bottom/max
Accession number
Prosome, length
Urosome length
Length, total
Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158
spellingShingle LATITUDE
LONGITUDE
DATE/TIME
Sequence identifier
Sample code/label
Species
Investigator
Area/locality
Cruise/expedition
Station label
Depth, top/min
Depth, bottom/max
Accession number
Prosome, length
Urosome length
Length, total
Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158
Cornils, Astrid
Wend-Heckmann, Britta
Held, Christoph
Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
topic_facet LATITUDE
LONGITUDE
DATE/TIME
Sequence identifier
Sample code/label
Species
Investigator
Area/locality
Cruise/expedition
Station label
Depth, top/min
Depth, bottom/max
Accession number
Prosome, length
Urosome length
Length, total
Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158
description Traditionally, many small-sized copepod species are considered to be widespread, bipolar or cosmopolitan. However, these large-scale distribution patterns need to be re-examined in view of increasing evidence of cryptic and pseudo-cryptic speciation in pelagic copepods. Here, we present a phylogeographic study of Oithona similis s.l. populations from the Arctic Ocean, the Southern Ocean and its northern boundaries, the North Atlantic and the Mediterrranean Sea. O. similis s.l. is considered as one of the most abundant species in temperate to polar oceans and acts as an important link in the trophic network between the microbial loop and higher trophic levels such as fish larvae. Two gene fragments were analysed: the mitochondrial cytochrome oxidase c subunit I (COI), and the nuclear ribosomal 28 S genetic marker. Seven distinct, geographically delimitated, mitochondrial lineages could be identified, with divergences among the lineages ranging from 8 to 24%, thus representing most likely cryptic or ... : Supplement to: Cornils, Astrid; Wend-Heckmann, Britta; Held, Christoph (2017): Global phylogeography of Oithona similis s.l. (Crustacea, Copepoda, Oithonidae) – A cosmopolitan plankton species or a complex of cryptic lineages? Molecular Phylogenetics and Evolution, 107, 473-485 ...
format Dataset
author Cornils, Astrid
Wend-Heckmann, Britta
Held, Christoph
author_facet Cornils, Astrid
Wend-Heckmann, Britta
Held, Christoph
author_sort Cornils, Astrid
title Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
title_short Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
title_full Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
title_fullStr Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
title_full_unstemmed Sampling information, length measurements, DNA alignments, models and phylogenetics trees for Oithona similis s.l. ...
title_sort sampling information, length measurements, dna alignments, models and phylogenetics trees for oithona similis s.l. ...
publisher PANGAEA
publishDate 2017
url https://dx.doi.org/10.1594/pangaea.862554
https://doi.pangaea.de/10.1594/PANGAEA.862554
genre Antarc*
Antarctic
Arctic Ocean
North Atlantic
Sea ice
Southern Ocean
Copepods
genre_facet Antarc*
Antarctic
Arctic Ocean
North Atlantic
Sea ice
Southern Ocean
Copepods
op_relation https://store.pangaea.de/Publications/Cornils-etal_2017_supplementary_material/Cornils-etal_2017_supplementary_material.zip
https://dx.doi.org/10.1016/j.ympev.2016.12.019
https://store.pangaea.de/Publications/Cornils-etal_2017_supplementary_material/Cornils-etal_2017_supplementary_material.zip
https://dx.doi.org/10.1007/s10152-015-0426-7
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
cc-by-3.0
op_doi https://doi.org/10.1594/pangaea.86255410.1016/j.ympev.2016.12.01910.1007/s10152-015-0426-7
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