Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008

Macrocystis pyrifera is a widely distributed, highly productive, seaweed. It is known to use bicarbonate (HCO3-) from seawater in photosynthesis and the main mechanism of utilization is attributed to the external catalyzed dehydration of HCO3- by the surface-bound enzyme carbonic anhydrase (CAext)....

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Main Authors: Fernández, Pamela A, Hurd, Catriona L, Roleda, Michael Y
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2014
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.839919
https://doi.pangaea.de/10.1594/PANGAEA.839919
id ftdatacite:10.1594/pangaea.839919
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Benthos
Bottles or small containers/Aquaria <20 L
Chromista
Coast and continental shelf
Laboratory experiment
Macroalgae
Macrocystis pyrifera
Ochrophyta
Other metabolic rates
Primary production/Photosynthesis
Single species
South Pacific
Temperate
Species
pH
Net photosynthesis rate, oxygen
Net photosynthesis rate, oxygen, standard error
Inhibition of net photosynthesis
Inhibition of net photosynthesis, standard error
Carbonic anhydrase activity
Carbonic anhydrase activity, standard error
Alkalinity, total
Carbon, inorganic, dissolved
Temperature, water
Salinity
Bicarbonate ion
Carbon dioxide
Carbonate ion
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate system computation flag
Aragonite saturation state
Calcite saturation state
Experiment
Spectrophotometric
Potentiometric titration
Coulometric titration
Calculated using SWCO2 Hunter, 2007
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Benthos
Bottles or small containers/Aquaria <20 L
Chromista
Coast and continental shelf
Laboratory experiment
Macroalgae
Macrocystis pyrifera
Ochrophyta
Other metabolic rates
Primary production/Photosynthesis
Single species
South Pacific
Temperate
Species
pH
Net photosynthesis rate, oxygen
Net photosynthesis rate, oxygen, standard error
Inhibition of net photosynthesis
Inhibition of net photosynthesis, standard error
Carbonic anhydrase activity
Carbonic anhydrase activity, standard error
Alkalinity, total
Carbon, inorganic, dissolved
Temperature, water
Salinity
Bicarbonate ion
Carbon dioxide
Carbonate ion
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate system computation flag
Aragonite saturation state
Calcite saturation state
Experiment
Spectrophotometric
Potentiometric titration
Coulometric titration
Calculated using SWCO2 Hunter, 2007
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Fernández, Pamela A
Hurd, Catriona L
Roleda, Michael Y
Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
topic_facet Benthos
Bottles or small containers/Aquaria <20 L
Chromista
Coast and continental shelf
Laboratory experiment
Macroalgae
Macrocystis pyrifera
Ochrophyta
Other metabolic rates
Primary production/Photosynthesis
Single species
South Pacific
Temperate
Species
pH
Net photosynthesis rate, oxygen
Net photosynthesis rate, oxygen, standard error
Inhibition of net photosynthesis
Inhibition of net photosynthesis, standard error
Carbonic anhydrase activity
Carbonic anhydrase activity, standard error
Alkalinity, total
Carbon, inorganic, dissolved
Temperature, water
Salinity
Bicarbonate ion
Carbon dioxide
Carbonate ion
Fugacity of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air
Carbonate system computation flag
Aragonite saturation state
Calcite saturation state
Experiment
Spectrophotometric
Potentiometric titration
Coulometric titration
Calculated using SWCO2 Hunter, 2007
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Macrocystis pyrifera is a widely distributed, highly productive, seaweed. It is known to use bicarbonate (HCO3-) from seawater in photosynthesis and the main mechanism of utilization is attributed to the external catalyzed dehydration of HCO3- by the surface-bound enzyme carbonic anhydrase (CAext). Here, we examined other putative HCO3- uptake mechanisms in M. pyrifera under pHT 9.00 (HCO3-: CO2 = 940:1) and pHT 7.65 (HCO3-: CO2 = 51:1). Rates of photosynthesis, and internal CA (CAint) and CAext activity were measured following the application of AZ which inhibits CAext, and DIDS which inhibits a different HCO3- uptake system, via an anion exchange (AE) protein. We found that the main mechanism of HCO3- uptake by M. pyrifera is via an AE protein, regardless of the HCO3-: CO2 ratio, with CAext making little contribution. Inhibiting the AE protein led to a 55%-65% decrease in photosynthetic rates. Inhibiting both the AE protein and CAext at pHT 9.00 led to 80%-100% inhibition of photosynthesis, whereas at pHT 7.65, passive CO2 diffusion supported 33% of photosynthesis. CAint was active at pHT 7.65 and 9.00, and activity was always higher than CAext, because of its role in dehydrating HCO3- to supply CO2 to RuBisCO. Interestingly, the main mechanism of HCO3- uptake in M. pyrifera was different than that in other Laminariales studied (CAext-catalyzed reaction) and we suggest that species-specific knowledge of carbon uptake mechanisms is required in order to elucidate how seaweeds might respond to future changes in HCO3-:CO2 due to ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-12-02.
format Dataset
author Fernández, Pamela A
Hurd, Catriona L
Roleda, Michael Y
author_facet Fernández, Pamela A
Hurd, Catriona L
Roleda, Michael Y
author_sort Fernández, Pamela A
title Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
title_short Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
title_full Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
title_fullStr Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
title_full_unstemmed Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008
title_sort bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp macrocystis pyrifera (laminariales, phaeophyceae) under variable ph, supplement to: fernández, pamela a; hurd, catriona l; roleda, michael y (2014): bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp macrocystis pyrifera (laminariales, phaeophyceae) under variable ph. journal of phycology, 50(6), 998-1008
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2014
url https://dx.doi.org/10.1594/pangaea.839919
https://doi.pangaea.de/10.1594/PANGAEA.839919
long_lat ENVELOPE(-60.366,-60.366,-62.682,-62.682)
geographic Hurd
Pacific
geographic_facet Hurd
Pacific
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/package=seacarb
https://dx.doi.org/10.1111/jpy.12247
https://cran.r-project.org/package=seacarb
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
cc-by-3.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.839919
https://doi.org/10.1111/jpy.12247
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spelling ftdatacite:10.1594/pangaea.839919 2023-05-15T17:51:02+02:00 Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH, supplement to: Fernández, Pamela A; Hurd, Catriona L; Roleda, Michael Y (2014): Bicarbonate uptake via an anion exchange protein is the main mechanism of inorganic carbon acquisition by the giant kelp Macrocystis pyrifera (Laminariales, Phaeophyceae) under variable pH. Journal of Phycology, 50(6), 998-1008 Fernández, Pamela A Hurd, Catriona L Roleda, Michael Y 2014 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.839919 https://doi.pangaea.de/10.1594/PANGAEA.839919 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.1111/jpy.12247 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 CC-BY Benthos Bottles or small containers/Aquaria <20 L Chromista Coast and continental shelf Laboratory experiment Macroalgae Macrocystis pyrifera Ochrophyta Other metabolic rates Primary production/Photosynthesis Single species South Pacific Temperate Species pH Net photosynthesis rate, oxygen Net photosynthesis rate, oxygen, standard error Inhibition of net photosynthesis Inhibition of net photosynthesis, standard error Carbonic anhydrase activity Carbonic anhydrase activity, standard error Alkalinity, total Carbon, inorganic, dissolved Temperature, water Salinity Bicarbonate ion Carbon dioxide Carbonate ion Fugacity of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air Carbonate system computation flag Aragonite saturation state Calcite saturation state Experiment Spectrophotometric Potentiometric titration Coulometric titration Calculated using SWCO2 Hunter, 2007 Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2014 ftdatacite https://doi.org/10.1594/pangaea.839919 https://doi.org/10.1111/jpy.12247 2021-11-05T12:55:41Z Macrocystis pyrifera is a widely distributed, highly productive, seaweed. It is known to use bicarbonate (HCO3-) from seawater in photosynthesis and the main mechanism of utilization is attributed to the external catalyzed dehydration of HCO3- by the surface-bound enzyme carbonic anhydrase (CAext). Here, we examined other putative HCO3- uptake mechanisms in M. pyrifera under pHT 9.00 (HCO3-: CO2 = 940:1) and pHT 7.65 (HCO3-: CO2 = 51:1). Rates of photosynthesis, and internal CA (CAint) and CAext activity were measured following the application of AZ which inhibits CAext, and DIDS which inhibits a different HCO3- uptake system, via an anion exchange (AE) protein. We found that the main mechanism of HCO3- uptake by M. pyrifera is via an AE protein, regardless of the HCO3-: CO2 ratio, with CAext making little contribution. Inhibiting the AE protein led to a 55%-65% decrease in photosynthetic rates. Inhibiting both the AE protein and CAext at pHT 9.00 led to 80%-100% inhibition of photosynthesis, whereas at pHT 7.65, passive CO2 diffusion supported 33% of photosynthesis. CAint was active at pHT 7.65 and 9.00, and activity was always higher than CAext, because of its role in dehydrating HCO3- to supply CO2 to RuBisCO. Interestingly, the main mechanism of HCO3- uptake in M. pyrifera was different than that in other Laminariales studied (CAext-catalyzed reaction) and we suggest that species-specific knowledge of carbon uptake mechanisms is required in order to elucidate how seaweeds might respond to future changes in HCO3-:CO2 due to ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-12-02. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Hurd ENVELOPE(-60.366,-60.366,-62.682,-62.682) Pacific