Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338
Accumulation of an intracellular pool of carbon (C(i) pool) is one strategy by which marine algae overcome the low abundance of dissolved CO2 (CO2 (aq) ) in modern seawater. To identify the environmental conditions under which algae accumulate an acid-labile C(i) pool, we applied a (14) C pulse-chas...
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Format: | Dataset |
Language: | English |
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PANGAEA - Data Publisher for Earth & Environmental Science
2014
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Online Access: | https://dx.doi.org/10.1594/pangaea.836733 https://doi.pangaea.de/10.1594/PANGAEA.836733 |
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ftdatacite:10.1594/pangaea.836733 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Chromista Emiliania huxleyi Haptophyta Laboratory experiment Laboratory strains Not applicable Ochrophyta Other metabolic rates Pelagos Phytoplankton Single species Thalassiosira weissflogii Table Figure Species Treatment pH Carbon incorporation rate per cell Temperature, water Salinity Alkalinity, total Carbon, inorganic, dissolved Carbon dioxide Partial pressure of carbon dioxide water at sea surface temperature wet air Cell density Cell biovolume Chlorophyll a per cell Carbon, intracellular pool per cell Carbon, intracellular pool per cell, standard deviation Ratio Time in minutes Replicate Carbon-14 incorporation per cell Time in seconds Carbon-14, organic Carbon-14, organic, standard deviation Carbon dioxide/Bicarbonate uptake ratio Carbon dioxide/Bicarbonate uptake ratio, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Chromista Emiliania huxleyi Haptophyta Laboratory experiment Laboratory strains Not applicable Ochrophyta Other metabolic rates Pelagos Phytoplankton Single species Thalassiosira weissflogii Table Figure Species Treatment pH Carbon incorporation rate per cell Temperature, water Salinity Alkalinity, total Carbon, inorganic, dissolved Carbon dioxide Partial pressure of carbon dioxide water at sea surface temperature wet air Cell density Cell biovolume Chlorophyll a per cell Carbon, intracellular pool per cell Carbon, intracellular pool per cell, standard deviation Ratio Time in minutes Replicate Carbon-14 incorporation per cell Time in seconds Carbon-14, organic Carbon-14, organic, standard deviation Carbon dioxide/Bicarbonate uptake ratio Carbon dioxide/Bicarbonate uptake ratio, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Isensee, Kirsten Erez, Jonathan Stoll, Heather M Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
topic_facet |
Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Chromista Emiliania huxleyi Haptophyta Laboratory experiment Laboratory strains Not applicable Ochrophyta Other metabolic rates Pelagos Phytoplankton Single species Thalassiosira weissflogii Table Figure Species Treatment pH Carbon incorporation rate per cell Temperature, water Salinity Alkalinity, total Carbon, inorganic, dissolved Carbon dioxide Partial pressure of carbon dioxide water at sea surface temperature wet air Cell density Cell biovolume Chlorophyll a per cell Carbon, intracellular pool per cell Carbon, intracellular pool per cell, standard deviation Ratio Time in minutes Replicate Carbon-14 incorporation per cell Time in seconds Carbon-14, organic Carbon-14, organic, standard deviation Carbon dioxide/Bicarbonate uptake ratio Carbon dioxide/Bicarbonate uptake ratio, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Accumulation of an intracellular pool of carbon (C(i) pool) is one strategy by which marine algae overcome the low abundance of dissolved CO2 (CO2 (aq) ) in modern seawater. To identify the environmental conditions under which algae accumulate an acid-labile C(i) pool, we applied a (14) C pulse-chase method, used originally in dinoflagellates, to two new classes of algae, coccolithophorids and diatoms. This method measures the carbon accumulation inside the cells without altering the medium carbon chemistry or culture cell density. We found that the diatom Thalassiosira weissflogii [(Grunow) G. Fryxell & Hasle] and a calcifying strain of the coccolithophorid Emiliania huxleyi [(Lohmann) W. W. Hay & H. P. Mohler] develop significant acid-labile C(i) pools. C(i) pools are measureable in cells cultured in media with 2-30 µmol/l CO2 (aq), corresponding to a medium pH of 8.6-7.9. The absolute C(i) pool was greater for the larger celled diatoms. For both algal classes, the C(i) pool became a negligible contributor to photosynthesis once CO2 (aq) exceeded 30 µmol/l. Combining the (14) C pulse-chase method and (14) C disequilibrium method enabled us to assess whether E. huxleyi and T. weissflogii exhibited thresholds for foregoing accumulation of DIC or reduced the reliance on bicarbonate uptake with increasing CO2 (aq) . We showed that the C(i) pool decreases with higher CO2 :HCO3 (-) uptake rates. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-15. |
format |
Dataset |
author |
Isensee, Kirsten Erez, Jonathan Stoll, Heather M |
author_facet |
Isensee, Kirsten Erez, Jonathan Stoll, Heather M |
author_sort |
Isensee, Kirsten |
title |
Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
title_short |
Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
title_full |
Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
title_fullStr |
Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
title_full_unstemmed |
Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 |
title_sort |
detection of a variable intracellular acid-labile carbon pool in thalassiosira weissflogii (heterokontophyta) and emiliania huxleyi (haptophyta) in response to changes in the seawater carbon system, supplement to: isensee, kirsten; erez, jonathan; stoll, heather m (2014): detection of a variable intracellular acid-labile carbon pool in thalassiosira weissflogii(heterokontophyta) and emiliania huxleyi (haptophyta) in response to changes in the seawater carbon system. physiologia plantarum, 150(2), 321-338 |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2014 |
url |
https://dx.doi.org/10.1594/pangaea.836733 https://doi.pangaea.de/10.1594/PANGAEA.836733 |
long_lat |
ENVELOPE(163.183,163.183,-77.617,-77.617) |
geographic |
Fryxell |
geographic_facet |
Fryxell |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://cran.r-project.org/package=seacarb https://dx.doi.org/10.1111/ppl.12096 https://cran.r-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.836733 https://doi.org/10.1111/ppl.12096 |
_version_ |
1766158724606459904 |
spelling |
ftdatacite:10.1594/pangaea.836733 2023-05-15T17:51:32+02:00 Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system, supplement to: Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M (2014): Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii(Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system. Physiologia Plantarum, 150(2), 321-338 Isensee, Kirsten Erez, Jonathan Stoll, Heather M 2014 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.836733 https://doi.pangaea.de/10.1594/PANGAEA.836733 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.1111/ppl.12096 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 CC-BY Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Chromista Emiliania huxleyi Haptophyta Laboratory experiment Laboratory strains Not applicable Ochrophyta Other metabolic rates Pelagos Phytoplankton Single species Thalassiosira weissflogii Table Figure Species Treatment pH Carbon incorporation rate per cell Temperature, water Salinity Alkalinity, total Carbon, inorganic, dissolved Carbon dioxide Partial pressure of carbon dioxide water at sea surface temperature wet air Cell density Cell biovolume Chlorophyll a per cell Carbon, intracellular pool per cell Carbon, intracellular pool per cell, standard deviation Ratio Time in minutes Replicate Carbon-14 incorporation per cell Time in seconds Carbon-14, organic Carbon-14, organic, standard deviation Carbon dioxide/Bicarbonate uptake ratio Carbon dioxide/Bicarbonate uptake ratio, standard deviation Carbonate system computation flag Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Potentiometric titration Calculated using CO2SYS Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2014 ftdatacite https://doi.org/10.1594/pangaea.836733 https://doi.org/10.1111/ppl.12096 2022-02-08T16:27:35Z Accumulation of an intracellular pool of carbon (C(i) pool) is one strategy by which marine algae overcome the low abundance of dissolved CO2 (CO2 (aq) ) in modern seawater. To identify the environmental conditions under which algae accumulate an acid-labile C(i) pool, we applied a (14) C pulse-chase method, used originally in dinoflagellates, to two new classes of algae, coccolithophorids and diatoms. This method measures the carbon accumulation inside the cells without altering the medium carbon chemistry or culture cell density. We found that the diatom Thalassiosira weissflogii [(Grunow) G. Fryxell & Hasle] and a calcifying strain of the coccolithophorid Emiliania huxleyi [(Lohmann) W. W. Hay & H. P. Mohler] develop significant acid-labile C(i) pools. C(i) pools are measureable in cells cultured in media with 2-30 µmol/l CO2 (aq), corresponding to a medium pH of 8.6-7.9. The absolute C(i) pool was greater for the larger celled diatoms. For both algal classes, the C(i) pool became a negligible contributor to photosynthesis once CO2 (aq) exceeded 30 µmol/l. Combining the (14) C pulse-chase method and (14) C disequilibrium method enabled us to assess whether E. huxleyi and T. weissflogii exhibited thresholds for foregoing accumulation of DIC or reduced the reliance on bicarbonate uptake with increasing CO2 (aq) . We showed that the C(i) pool decreases with higher CO2 :HCO3 (-) uptake rates. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-15. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Fryxell ENVELOPE(163.183,163.183,-77.617,-77.617) |