Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce...
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Format: | Dataset |
Language: | English |
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PANGAEA - Data Publisher for Earth & Environmental Science
2012
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Subjects: | |
Online Access: | https://dx.doi.org/10.1594/pangaea.831372 https://doi.pangaea.de/10.1594/PANGAEA.831372 |
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ftdatacite:10.1594/pangaea.831372 |
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openpolar |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cytophaga sp. Growth/Morphology Heterotrophic prokaryotes Laboratory experiment Laboratory strains Mediterranean Sea Other metabolic rates Pelagos Respiration Single species Species Strain Treatment pH pH, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Alkalinity, total Alkalinity, total, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard error Fluorescence, particulate organic matter Fluorescence, particulate organic matter, standard error Abundance per volume Abundance, standard error Leucine incorporation rate Leucine incorporation rate, standard error Respiration rate, carbon dioxide Respiration rate, carbon dioxide, standard error Bacteria, growth efficiency Bacteria, growth efficiency, standard error Carbon fixation rate Carbon fixation rate, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cytophaga sp. Growth/Morphology Heterotrophic prokaryotes Laboratory experiment Laboratory strains Mediterranean Sea Other metabolic rates Pelagos Respiration Single species Species Strain Treatment pH pH, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Alkalinity, total Alkalinity, total, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard error Fluorescence, particulate organic matter Fluorescence, particulate organic matter, standard error Abundance per volume Abundance, standard error Leucine incorporation rate Leucine incorporation rate, standard error Respiration rate, carbon dioxide Respiration rate, carbon dioxide, standard error Bacteria, growth efficiency Bacteria, growth efficiency, standard error Carbon fixation rate Carbon fixation rate, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Teira, Eva Fernández, A Alvarez-Salgado, Xose Anton García-Martín, Enma Elena Serret, Pablo Sobrino, Cristina Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
topic_facet |
Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cytophaga sp. Growth/Morphology Heterotrophic prokaryotes Laboratory experiment Laboratory strains Mediterranean Sea Other metabolic rates Pelagos Respiration Single species Species Strain Treatment pH pH, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Alkalinity, total Alkalinity, total, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard error Fluorescence, particulate organic matter Fluorescence, particulate organic matter, standard error Abundance per volume Abundance, standard error Leucine incorporation rate Leucine incorporation rate, standard error Respiration rate, carbon dioxide Respiration rate, carbon dioxide, standard error Bacteria, growth efficiency Bacteria, growth efficiency, standard error Carbon fixation rate Carbon fixation rate, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO2 concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO2 did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO2 (pCO2) caused, in both cases, higher rates of CO2 fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO2 concentrations and ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-04-01. |
format |
Dataset |
author |
Teira, Eva Fernández, A Alvarez-Salgado, Xose Anton García-Martín, Enma Elena Serret, Pablo Sobrino, Cristina |
author_facet |
Teira, Eva Fernández, A Alvarez-Salgado, Xose Anton García-Martín, Enma Elena Serret, Pablo Sobrino, Cristina |
author_sort |
Teira, Eva |
title |
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
title_short |
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
title_full |
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
title_fullStr |
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
title_full_unstemmed |
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 |
title_sort |
seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, co2 fixation and respiration) of rhodobacteraceae (strain med165) and flavobacteriaceae (strain med217) in a laboratory experiment, supplement to: teira, eva; fernández, ana; alvarez-salgado, xose anton; garcía-martín, enma elena; serret, pablo; sobrino, cristina (2012): response of two marine bacterial isolates to high co2 concentration. marine ecology progress series, 453, 27-36 |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2012 |
url |
https://dx.doi.org/10.1594/pangaea.831372 https://doi.pangaea.de/10.1594/PANGAEA.831372 |
long_lat |
ENVELOPE(-64.483,-64.483,-65.633,-65.633) ENVELOPE(-63.717,-63.717,-64.283,-64.283) |
geographic |
Alvarez Pablo |
geographic_facet |
Alvarez Pablo |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://cran.r-project.org/package=seacarb https://dx.doi.org/10.3354/meps09644 https://cran.r-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.831372 https://doi.org/10.3354/meps09644 |
_version_ |
1766157307699265536 |
spelling |
ftdatacite:10.1594/pangaea.831372 2023-05-15T17:50:31+02:00 Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 Teira, Eva Fernández, A Alvarez-Salgado, Xose Anton García-Martín, Enma Elena Serret, Pablo Sobrino, Cristina 2012 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.831372 https://doi.pangaea.de/10.1594/PANGAEA.831372 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.3354/meps09644 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 CC-BY Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cytophaga sp. Growth/Morphology Heterotrophic prokaryotes Laboratory experiment Laboratory strains Mediterranean Sea Other metabolic rates Pelagos Respiration Single species Species Strain Treatment pH pH, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Alkalinity, total Alkalinity, total, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard error Fluorescence, particulate organic matter Fluorescence, particulate organic matter, standard error Abundance per volume Abundance, standard error Leucine incorporation rate Leucine incorporation rate, standard error Respiration rate, carbon dioxide Respiration rate, carbon dioxide, standard error Bacteria, growth efficiency Bacteria, growth efficiency, standard error Carbon fixation rate Carbon fixation rate, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2012 ftdatacite https://doi.org/10.1594/pangaea.831372 https://doi.org/10.3354/meps09644 2021-11-05T12:55:41Z Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO2 concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO2 did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO2 (pCO2) caused, in both cases, higher rates of CO2 fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO2 concentrations and ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-04-01. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Alvarez ENVELOPE(-64.483,-64.483,-65.633,-65.633) Pablo ENVELOPE(-63.717,-63.717,-64.283,-64.283) |