Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36

Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce...

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Main Authors: Teira, Eva, Fernández, A, Alvarez-Salgado, Xose Anton, García-Martín, Enma Elena, Serret, Pablo, Sobrino, Cristina
Format: Dataset
Language:English
Published: PANGAEA - Data Publisher for Earth & Environmental Science 2012
Subjects:
pH
Online Access:https://dx.doi.org/10.1594/pangaea.831372
https://doi.pangaea.de/10.1594/PANGAEA.831372
id ftdatacite:10.1594/pangaea.831372
record_format openpolar
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language English
topic Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cytophaga sp.
Growth/Morphology
Heterotrophic prokaryotes
Laboratory experiment
Laboratory strains
Mediterranean Sea
Other metabolic rates
Pelagos
Respiration
Single species
Species
Strain
Treatment
pH
pH, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Alkalinity, total
Alkalinity, total, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard error
Fluorescence, particulate organic matter
Fluorescence, particulate organic matter, standard error
Abundance per volume
Abundance, standard error
Leucine incorporation rate
Leucine incorporation rate, standard error
Respiration rate, carbon dioxide
Respiration rate, carbon dioxide, standard error
Bacteria, growth efficiency
Bacteria, growth efficiency, standard error
Carbon fixation rate
Carbon fixation rate, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Potentiometric
Calculated
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
spellingShingle Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cytophaga sp.
Growth/Morphology
Heterotrophic prokaryotes
Laboratory experiment
Laboratory strains
Mediterranean Sea
Other metabolic rates
Pelagos
Respiration
Single species
Species
Strain
Treatment
pH
pH, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Alkalinity, total
Alkalinity, total, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard error
Fluorescence, particulate organic matter
Fluorescence, particulate organic matter, standard error
Abundance per volume
Abundance, standard error
Leucine incorporation rate
Leucine incorporation rate, standard error
Respiration rate, carbon dioxide
Respiration rate, carbon dioxide, standard error
Bacteria, growth efficiency
Bacteria, growth efficiency, standard error
Carbon fixation rate
Carbon fixation rate, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Potentiometric
Calculated
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
Teira, Eva
Fernández, A
Alvarez-Salgado, Xose Anton
García-Martín, Enma Elena
Serret, Pablo
Sobrino, Cristina
Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
topic_facet Bacteria
Biomass/Abundance/Elemental composition
Bottles or small containers/Aquaria <20 L
Cytophaga sp.
Growth/Morphology
Heterotrophic prokaryotes
Laboratory experiment
Laboratory strains
Mediterranean Sea
Other metabolic rates
Pelagos
Respiration
Single species
Species
Strain
Treatment
pH
pH, standard error
Partial pressure of carbon dioxide water at sea surface temperature wet air
Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error
Carbon, inorganic, dissolved
Carbon, inorganic, dissolved, standard error
Alkalinity, total
Alkalinity, total, standard error
Temperature, water
Temperature, water, standard error
Salinity
Salinity, standard error
Fluorescence, dissolved organic matter
Fluorescence, dissolved organic matter, standard error
Fluorescence, particulate organic matter
Fluorescence, particulate organic matter, standard error
Abundance per volume
Abundance, standard error
Leucine incorporation rate
Leucine incorporation rate, standard error
Respiration rate, carbon dioxide
Respiration rate, carbon dioxide, standard error
Bacteria, growth efficiency
Bacteria, growth efficiency, standard error
Carbon fixation rate
Carbon fixation rate, standard deviation
Carbonate system computation flag
Carbon dioxide
Fugacity of carbon dioxide water at sea surface temperature wet air
Bicarbonate ion
Carbonate ion
Aragonite saturation state
Calcite saturation state
Potentiometric
Calculated
Calculated using seacarb after Nisumaa et al. 2010
Ocean Acidification International Coordination Centre OA-ICC
description Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO2 concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO2 did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO2 (pCO2) caused, in both cases, higher rates of CO2 fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO2 concentrations and ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-04-01.
format Dataset
author Teira, Eva
Fernández, A
Alvarez-Salgado, Xose Anton
García-Martín, Enma Elena
Serret, Pablo
Sobrino, Cristina
author_facet Teira, Eva
Fernández, A
Alvarez-Salgado, Xose Anton
García-Martín, Enma Elena
Serret, Pablo
Sobrino, Cristina
author_sort Teira, Eva
title Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
title_short Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
title_full Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
title_fullStr Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
title_full_unstemmed Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36
title_sort seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, co2 fixation and respiration) of rhodobacteraceae (strain med165) and flavobacteriaceae (strain med217) in a laboratory experiment, supplement to: teira, eva; fernández, ana; alvarez-salgado, xose anton; garcía-martín, enma elena; serret, pablo; sobrino, cristina (2012): response of two marine bacterial isolates to high co2 concentration. marine ecology progress series, 453, 27-36
publisher PANGAEA - Data Publisher for Earth & Environmental Science
publishDate 2012
url https://dx.doi.org/10.1594/pangaea.831372
https://doi.pangaea.de/10.1594/PANGAEA.831372
long_lat ENVELOPE(-64.483,-64.483,-65.633,-65.633)
ENVELOPE(-63.717,-63.717,-64.283,-64.283)
geographic Alvarez
Pablo
geographic_facet Alvarez
Pablo
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://cran.r-project.org/package=seacarb
https://dx.doi.org/10.3354/meps09644
https://cran.r-project.org/package=seacarb
op_rights Creative Commons Attribution 3.0 Unported
https://creativecommons.org/licenses/by/3.0/legalcode
cc-by-3.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/pangaea.831372
https://doi.org/10.3354/meps09644
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spelling ftdatacite:10.1594/pangaea.831372 2023-05-15T17:50:31+02:00 Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment, supplement to: Teira, Eva; Fernández, Ana; Alvarez-Salgado, Xose Anton; García-Martín, Enma Elena; Serret, Pablo; Sobrino, Cristina (2012): Response of two marine bacterial isolates to high CO2 concentration. Marine Ecology Progress Series, 453, 27-36 Teira, Eva Fernández, A Alvarez-Salgado, Xose Anton García-Martín, Enma Elena Serret, Pablo Sobrino, Cristina 2012 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.831372 https://doi.pangaea.de/10.1594/PANGAEA.831372 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://cran.r-project.org/package=seacarb https://dx.doi.org/10.3354/meps09644 https://cran.r-project.org/package=seacarb Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/legalcode cc-by-3.0 CC-BY Bacteria Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria <20 L Cytophaga sp. Growth/Morphology Heterotrophic prokaryotes Laboratory experiment Laboratory strains Mediterranean Sea Other metabolic rates Pelagos Respiration Single species Species Strain Treatment pH pH, standard error Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide water at sea surface temperature wet air, standard error Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard error Alkalinity, total Alkalinity, total, standard error Temperature, water Temperature, water, standard error Salinity Salinity, standard error Fluorescence, dissolved organic matter Fluorescence, dissolved organic matter, standard error Fluorescence, particulate organic matter Fluorescence, particulate organic matter, standard error Abundance per volume Abundance, standard error Leucine incorporation rate Leucine incorporation rate, standard error Respiration rate, carbon dioxide Respiration rate, carbon dioxide, standard error Bacteria, growth efficiency Bacteria, growth efficiency, standard error Carbon fixation rate Carbon fixation rate, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Aragonite saturation state Calcite saturation state Potentiometric Calculated Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Supplementary Dataset dataset Dataset 2012 ftdatacite https://doi.org/10.1594/pangaea.831372 https://doi.org/10.3354/meps09644 2021-11-05T12:55:41Z Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO2 concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO2 did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO2 (pCO2) caused, in both cases, higher rates of CO2 fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO2 concentrations and ocean acidification. : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-04-01. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Alvarez ENVELOPE(-64.483,-64.483,-65.633,-65.633) Pablo ENVELOPE(-63.717,-63.717,-64.283,-64.283)